miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 189669 0.68 0.565015
Target:  5'- cGAGCGGucgccCCGGCCGGgacuuuuauaauUCGAUcGGAGGCc -3'
miRNA:   3'- -CUCGCC-----GGCCGGCC------------GGCUAcCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 34084 0.68 0.565015
Target:  5'- cGGCGGCCGGgCaGCCGucGGGcgGCc -3'
miRNA:   3'- cUCGCCGGCCgGcCGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 118980 0.68 0.555472
Target:  5'- uGGCGGagcaCGuCCGGgCGcgGGGAGACg -3'
miRNA:   3'- cUCGCCg---GCcGGCCgGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 44291 0.68 0.555472
Target:  5'- -cGCGcccGCCgGGCCGGCgaGgcGGGGAGCg -3'
miRNA:   3'- cuCGC---CGG-CCGGCCGg-CuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 16305 0.68 0.545029
Target:  5'- uGGCGGCCgcGGCCGGCUGGaucccccugccccUGGccGGCa -3'
miRNA:   3'- cUCGCCGG--CCGGCCGGCU-------------ACCcuUUG- -5'
10842 5' -62.1 NC_002794.1 + 185263 0.69 0.536533
Target:  5'- cAGCGGaCGccGCCGGCCGAgUGGGccgccGGACa -3'
miRNA:   3'- cUCGCCgGC--CGGCCGGCU-ACCC-----UUUG- -5'
10842 5' -62.1 NC_002794.1 + 48543 0.69 0.527148
Target:  5'- cGGGuCGGCCGaccacuccGCCGGCCgcccguccaGAUGGGcGAGCc -3'
miRNA:   3'- -CUC-GCCGGC--------CGGCCGG---------CUACCC-UUUG- -5'
10842 5' -62.1 NC_002794.1 + 115835 0.69 0.527148
Target:  5'- cGGCGGggcCCGGCgGGCuCGGgccUGGGAcGCg -3'
miRNA:   3'- cUCGCC---GGCCGgCCG-GCU---ACCCUuUG- -5'
10842 5' -62.1 NC_002794.1 + 98353 0.69 0.517824
Target:  5'- cGAcCGGCCGaucgccGCgCGGCUGgcGGGAGACg -3'
miRNA:   3'- -CUcGCCGGC------CG-GCCGGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 182277 0.69 0.517824
Target:  5'- cGAGCGGCCucccaugacggGGCgGGUgGAcGGGcAGACg -3'
miRNA:   3'- -CUCGCCGG-----------CCGgCCGgCUaCCC-UUUG- -5'
10842 5' -62.1 NC_002794.1 + 94298 0.69 0.517824
Target:  5'- gGGGCGGCuCGGgCGcGCCGAUGcaaGGAcuGCa -3'
miRNA:   3'- -CUCGCCG-GCCgGC-CGGCUAC---CCUu-UG- -5'
10842 5' -62.1 NC_002794.1 + 87274 0.69 0.508567
Target:  5'- -uGCaGGCCGGgCGGgUGGgggugGGGAAGCg -3'
miRNA:   3'- cuCG-CCGGCCgGCCgGCUa----CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 14570 0.69 0.508567
Target:  5'- aGGCGaGCCGGCCgaccgaagcgGGCCG-UGGcGAGCg -3'
miRNA:   3'- cUCGC-CGGCCGG----------CCGGCuACCcUUUG- -5'
10842 5' -62.1 NC_002794.1 + 129075 0.69 0.49938
Target:  5'- -cGCGGCUGGCggCGGaccguCCGGUGGGuGGACu -3'
miRNA:   3'- cuCGCCGGCCG--GCC-----GGCUACCC-UUUG- -5'
10842 5' -62.1 NC_002794.1 + 38711 0.69 0.49938
Target:  5'- cGAGCGccCCGGCC-GCCGAaaUGGGGAc- -3'
miRNA:   3'- -CUCGCc-GGCCGGcCGGCU--ACCCUUug -5'
10842 5' -62.1 NC_002794.1 + 70230 0.69 0.49938
Target:  5'- cGGGCGGgCGGCCGGCCGccccGcAGCa -3'
miRNA:   3'- -CUCGCCgGCCGGCCGGCuaccCuUUG- -5'
10842 5' -62.1 NC_002794.1 + 96759 0.69 0.49938
Target:  5'- aAGCGGCCGG-CGGUCGAgucgcccGGGGu-- -3'
miRNA:   3'- cUCGCCGGCCgGCCGGCUa------CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 146876 0.69 0.490268
Target:  5'- uGGGgGGCgCGGUCGGCCGAUGa----- -3'
miRNA:   3'- -CUCgCCG-GCCGGCCGGCUACccuuug -5'
10842 5' -62.1 NC_002794.1 + 40511 0.69 0.490268
Target:  5'- cGAGUcacGGCC-GCCGacgcGCCGAcGGGAGACg -3'
miRNA:   3'- -CUCG---CCGGcCGGC----CGGCUaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 125849 0.7 0.481234
Target:  5'- -cGCuGCCGGCUggacaagcgGGCCGuGUGGGAGAg -3'
miRNA:   3'- cuCGcCGGCCGG---------CCGGC-UACCCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.