Results 81 - 100 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 5' | -62.1 | NC_002794.1 | + | 125849 | 0.7 | 0.481234 |
Target: 5'- -cGCuGCCGGCUggacaagcgGGCCGuGUGGGAGAg -3' miRNA: 3'- cuCGcCGGCCGG---------CCGGC-UACCCUUUg -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 32261 | 0.7 | 0.481234 |
Target: 5'- uGGCGcucgaCGGCCGGCCGAUcGGcGAGCg -3' miRNA: 3'- cUCGCcg---GCCGGCCGGCUA-CCcUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 130661 | 0.7 | 0.480335 |
Target: 5'- -cGCcGCCGGCCGcgggcuccGCCGcggccucGUGGGAGGCg -3' miRNA: 3'- cuCGcCGGCCGGC--------CGGC-------UACCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 94149 | 0.7 | 0.472281 |
Target: 5'- -cGCGGCgGcGCUGGaCGGUGGGggGg -3' miRNA: 3'- cuCGCCGgC-CGGCCgGCUACCCuuUg -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 101495 | 0.7 | 0.466951 |
Target: 5'- cGGCGGCCGGuCCGagcggugcggcacacGCCGgcGGGguGCc -3' miRNA: 3'- cUCGCCGGCC-GGC---------------CGGCuaCCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 104486 | 0.7 | 0.463414 |
Target: 5'- cGGGCGGCCacGG-CGGCCGGgucGGGcgaGAACg -3' miRNA: 3'- -CUCGCCGG--CCgGCCGGCUa--CCC---UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 19535 | 0.7 | 0.463414 |
Target: 5'- -cGCGGCgCGGCCcGCCGGUGucGGACc -3' miRNA: 3'- cuCGCCG-GCCGGcCGGCUACccUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 117367 | 0.7 | 0.454635 |
Target: 5'- gGAGCGGCgGGCCGccuGCaCGGUcgcGGcGAAGCg -3' miRNA: 3'- -CUCGCCGgCCGGC---CG-GCUA---CC-CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 91593 | 0.7 | 0.453762 |
Target: 5'- cGAGUGGCCGcuggugcGCgCGGCCGA-GGGccACg -3' miRNA: 3'- -CUCGCCGGC-------CG-GCCGGCUaCCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 116864 | 0.7 | 0.445946 |
Target: 5'- cGGCGGCCGuGUCGcGCuCGucaGGGggGCg -3' miRNA: 3'- cUCGCCGGC-CGGC-CG-GCua-CCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 32916 | 0.7 | 0.43735 |
Target: 5'- cGGGCGGCa-GCaGGUCGgcGGGAAGCg -3' miRNA: 3'- -CUCGCCGgcCGgCCGGCuaCCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 53305 | 0.71 | 0.428851 |
Target: 5'- cGAGCGGUCGGCCGGCgccgcgaGAUcGGcucGAACc -3' miRNA: 3'- -CUCGCCGGCCGGCCGg------CUAcCC---UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 89839 | 0.71 | 0.425479 |
Target: 5'- cGAGuCGGUCGGCCGGCCGucccuuucucgguUGGcuuGGCg -3' miRNA: 3'- -CUC-GCCGGCCGGCCGGCu------------ACCcu-UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 131037 | 0.71 | 0.418782 |
Target: 5'- -cGCGGCCGGCUGccGCCGAUGuucgucgacgacGAGACg -3' miRNA: 3'- cuCGCCGGCCGGC--CGGCUACc-----------CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 94011 | 0.71 | 0.412149 |
Target: 5'- cGGCGGCgGGCCGGCgGGUuccgccggcGGGcccgaGAGCg -3' miRNA: 3'- cUCGCCGgCCGGCCGgCUA---------CCC-----UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 126265 | 0.71 | 0.40395 |
Target: 5'- cGGCGGCUGGCUGGCgGcgcUGGGcuuGCu -3' miRNA: 3'- cUCGCCGGCCGGCCGgCu--ACCCuu-UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 101599 | 0.71 | 0.40395 |
Target: 5'- gGGGCGgguGCCGGCCcGCCGGgcgGGGguGCc -3' miRNA: 3'- -CUCGC---CGGCCGGcCGGCUa--CCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 95780 | 0.71 | 0.395856 |
Target: 5'- cGGCGGCCggggcgagaGGCgCGGCgGAggaaccgGGGGAGCg -3' miRNA: 3'- cUCGCCGG---------CCG-GCCGgCUa------CCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 108457 | 0.71 | 0.387866 |
Target: 5'- cGGCGGCCcGCCGGCaCGGgccgagGGGcGACc -3' miRNA: 3'- cUCGCCGGcCGGCCG-GCUa-----CCCuUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 133621 | 0.71 | 0.379983 |
Target: 5'- uAGuCaGUCGGUCGGUCGGUGGGAAGa -3' miRNA: 3'- cUC-GcCGGCCGGCCGGCUACCCUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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