miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 692 0.66 0.661801
Target:  5'- -cGCGGCCGGaguCGGCUGuuuuUGGGc--- -3'
miRNA:   3'- cuCGCCGGCCg--GCCGGCu---ACCCuuug -5'
10842 5' -62.1 NC_002794.1 + 1175 0.66 0.674372
Target:  5'- uGGGCGGgguuccgcccacccaCCGGCCauauaagGGCCGAUcGGGGc-- -3'
miRNA:   3'- -CUCGCC---------------GGCCGG-------CCGGCUA-CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 10959 0.66 0.690728
Target:  5'- gGAGgGGCCGGCCGagacguCCGAUGccugcuccGAGGCc -3'
miRNA:   3'- -CUCgCCGGCCGGCc-----GGCUACc-------CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 14570 0.69 0.508567
Target:  5'- aGGCGaGCCGGCCgaccgaagcgGGCCG-UGGcGAGCg -3'
miRNA:   3'- cUCGC-CGGCCGG----------CCGGCuACCcUUUG- -5'
10842 5' -62.1 NC_002794.1 + 14679 0.68 0.584223
Target:  5'- -cGCGGCggCGGUCGcGCUGcuccugacggcGUGGGGAGCg -3'
miRNA:   3'- cuCGCCG--GCCGGC-CGGC-----------UACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 16305 0.68 0.545029
Target:  5'- uGGCGGCCgcGGCCGGCUGGaucccccugccccUGGccGGCa -3'
miRNA:   3'- cUCGCCGG--CCGGCCGGCU-------------ACCcuUUG- -5'
10842 5' -62.1 NC_002794.1 + 18816 0.66 0.709804
Target:  5'- cGGGuCGGCgaccuCGGCCGGCgCGGa-GGAGACc -3'
miRNA:   3'- -CUC-GCCG-----GCCGGCCG-GCUacCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 19535 0.7 0.463414
Target:  5'- -cGCGGCgCGGCCcGCCGGUGucGGACc -3'
miRNA:   3'- cuCGCCG-GCCGGcCGGCUACccUUUG- -5'
10842 5' -62.1 NC_002794.1 + 21866 0.66 0.681119
Target:  5'- uGAaCGGUCcgcgaGGCCGGCCGcgGGGuguccGCg -3'
miRNA:   3'- -CUcGCCGG-----CCGGCCGGCuaCCCuu---UG- -5'
10842 5' -62.1 NC_002794.1 + 26653 0.72 0.334985
Target:  5'- cGGCGGCCGGCUcGUCGgcGGGGuggAGCg -3'
miRNA:   3'- cUCGCCGGCCGGcCGGCuaCCCU---UUG- -5'
10842 5' -62.1 NC_002794.1 + 32261 0.7 0.481234
Target:  5'- uGGCGcucgaCGGCCGGCCGAUcGGcGAGCg -3'
miRNA:   3'- cUCGCcg---GCCGGCCGGCUA-CCcUUUG- -5'
10842 5' -62.1 NC_002794.1 + 32307 0.84 0.062183
Target:  5'- cGGCGGCCGcGCCGGCCGcgGccGGAGACa -3'
miRNA:   3'- cUCGCCGGC-CGGCCGGCuaC--CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 32853 0.75 0.251269
Target:  5'- uAGCGGCagCGGCCGaGCCGgcGGGcgGCg -3'
miRNA:   3'- cUCGCCG--GCCGGC-CGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 32916 0.7 0.43735
Target:  5'- cGGGCGGCa-GCaGGUCGgcGGGAAGCg -3'
miRNA:   3'- -CUCGCCGgcCGgCCGGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 34084 0.68 0.565015
Target:  5'- cGGCGGCCGGgCaGCCGucGGGcgGCc -3'
miRNA:   3'- cUCGCCGGCCgGcCGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 34734 0.73 0.320876
Target:  5'- cGGGCGGCCGcagagcgcGCgaCGGCgCGGUGGGAcGCg -3'
miRNA:   3'- -CUCGCCGGC--------CG--GCCG-GCUACCCUuUG- -5'
10842 5' -62.1 NC_002794.1 + 37751 0.72 0.356987
Target:  5'- cGGCGGCgCGGCgGcGCCGgcGGGAGc- -3'
miRNA:   3'- cUCGCCG-GCCGgC-CGGCuaCCCUUug -5'
10842 5' -62.1 NC_002794.1 + 38436 0.68 0.593876
Target:  5'- uGGCGGCgGGCCGGaCUGA--GGAGccgGCg -3'
miRNA:   3'- cUCGCCGgCCGGCC-GGCUacCCUU---UG- -5'
10842 5' -62.1 NC_002794.1 + 38711 0.69 0.49938
Target:  5'- cGAGCGccCCGGCC-GCCGAaaUGGGGAc- -3'
miRNA:   3'- -CUCGCc-GGCCGGcCGGCU--ACCCUUug -5'
10842 5' -62.1 NC_002794.1 + 40414 0.66 0.706956
Target:  5'- -cGgGGUCGGCCGGCgacucugcagaucuCGGUaGuGGGAGCg -3'
miRNA:   3'- cuCgCCGGCCGGCCG--------------GCUA-C-CCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.