miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 94011 0.71 0.412149
Target:  5'- cGGCGGCgGGCCGGCgGGUuccgccggcGGGcccgaGAGCg -3'
miRNA:   3'- cUCGCCGgCCGGCCGgCUA---------CCC-----UUUG- -5'
10842 5' -62.1 NC_002794.1 + 94149 0.7 0.472281
Target:  5'- -cGCGGCgGcGCUGGaCGGUGGGggGg -3'
miRNA:   3'- cuCGCCGgC-CGGCCgGCUACCCuuUg -5'
10842 5' -62.1 NC_002794.1 + 94298 0.69 0.517824
Target:  5'- gGGGCGGCuCGGgCGcGCCGAUGcaaGGAcuGCa -3'
miRNA:   3'- -CUCGCCG-GCCgGC-CGGCUAC---CCUu-UG- -5'
10842 5' -62.1 NC_002794.1 + 94491 0.67 0.63268
Target:  5'- -cGCGGCC-GCgGGCCGuggcgGGGAu-- -3'
miRNA:   3'- cuCGCCGGcCGgCCGGCua---CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 95780 0.71 0.395856
Target:  5'- cGGCGGCCggggcgagaGGCgCGGCgGAggaaccgGGGGAGCg -3'
miRNA:   3'- cUCGCCGG---------CCG-GCCGgCUa------CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 95835 0.74 0.275031
Target:  5'- gGAGCGGCgGcGgCGGCCG--GGGAGGCg -3'
miRNA:   3'- -CUCGCCGgC-CgGCCGGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 96759 0.69 0.49938
Target:  5'- aAGCGGCCGG-CGGUCGAgucgcccGGGGu-- -3'
miRNA:   3'- cUCGCCGGCCgGCCGGCUa------CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 98353 0.69 0.517824
Target:  5'- cGAcCGGCCGaucgccGCgCGGCUGgcGGGAGACg -3'
miRNA:   3'- -CUcGCCGGC------CG-GCCGGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 98924 0.68 0.593876
Target:  5'- uGAGCgGGCUgGGCgCGGCCGGgaaGGGGc-- -3'
miRNA:   3'- -CUCG-CCGG-CCG-GCCGGCUa--CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 100798 0.66 0.694559
Target:  5'- -cGCGGCCGcuucugcgccuacguGCCGGgCGgcGGGGgccGGCa -3'
miRNA:   3'- cuCGCCGGC---------------CGGCCgGCuaCCCU---UUG- -5'
10842 5' -62.1 NC_002794.1 + 101210 0.67 0.622964
Target:  5'- aGGCGGCCGcCCGGCaGAUGGu---- -3'
miRNA:   3'- cUCGCCGGCcGGCCGgCUACCcuuug -5'
10842 5' -62.1 NC_002794.1 + 101495 0.7 0.466951
Target:  5'- cGGCGGCCGGuCCGagcggugcggcacacGCCGgcGGGguGCc -3'
miRNA:   3'- cUCGCCGGCC-GGC---------------CGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 101599 0.71 0.40395
Target:  5'- gGGGCGgguGCCGGCCcGCCGGgcgGGGguGCc -3'
miRNA:   3'- -CUCGC---CGGCCGGcCGGCUa--CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 104486 0.7 0.463414
Target:  5'- cGGGCGGCCacGG-CGGCCGGgucGGGcgaGAACg -3'
miRNA:   3'- -CUCGCCGG--CCgGCCGGCUa--CCC---UUUG- -5'
10842 5' -62.1 NC_002794.1 + 106980 0.74 0.287571
Target:  5'- cGGCGGCCGGCaCGGC-GGUGGcGgcGCu -3'
miRNA:   3'- cUCGCCGGCCG-GCCGgCUACC-CuuUG- -5'
10842 5' -62.1 NC_002794.1 + 108457 0.71 0.387866
Target:  5'- cGGCGGCCcGCCGGCaCGGgccgagGGGcGACc -3'
miRNA:   3'- cUCGCCGGcCGGCCG-GCUa-----CCCuUUG- -5'
10842 5' -62.1 NC_002794.1 + 110277 0.66 0.684967
Target:  5'- cGGCGGCC-GCCGuccucgggcccgagaGCCGcgGGGAc-- -3'
miRNA:   3'- cUCGCCGGcCGGC---------------CGGCuaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 110459 0.66 0.719257
Target:  5'- cGGCGaGCCGGCucguCGGCuCGggGGGuAGAg -3'
miRNA:   3'- cUCGC-CGGCCG----GCCG-GCuaCCC-UUUg -5'
10842 5' -62.1 NC_002794.1 + 112111 0.67 0.652107
Target:  5'- -cGCGGCCGGgacgaCGGC-GcgGGGAggUa -3'
miRNA:   3'- cuCGCCGGCCg----GCCGgCuaCCCUuuG- -5'
10842 5' -62.1 NC_002794.1 + 112334 0.78 0.153095
Target:  5'- gGAGCGcGCCGGCCGGCggcgccggcggCGGggcGGGGAGCu -3'
miRNA:   3'- -CUCGC-CGGCCGGCCG-----------GCUa--CCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.