miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 114346 0.67 0.651136
Target:  5'- cAGCGGCUcguccgccgccagGGCCGGCUGcaGGGccGCg -3'
miRNA:   3'- cUCGCCGG-------------CCGGCCGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 115835 0.69 0.527148
Target:  5'- cGGCGGggcCCGGCgGGCuCGGgccUGGGAcGCg -3'
miRNA:   3'- cUCGCC---GGCCGgCCG-GCU---ACCCUuUG- -5'
10842 5' -62.1 NC_002794.1 + 115932 0.74 0.283762
Target:  5'- cGGCGGCgGGCCGGCCcgccgcgugucgccgGGgaccgugggGGGGAGCg -3'
miRNA:   3'- cUCGCCGgCCGGCCGG---------------CUa--------CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 116365 0.66 0.671475
Target:  5'- -cGCGGuCCGaCCGGUCGGUGGcguGCg -3'
miRNA:   3'- cuCGCC-GGCcGGCCGGCUACCcuuUG- -5'
10842 5' -62.1 NC_002794.1 + 116635 0.68 0.565015
Target:  5'- aGAGCGGCaggGGcCCGGCCGuccGGcucuuGAGGCg -3'
miRNA:   3'- -CUCGCCGg--CC-GGCCGGCua-CC-----CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 116864 0.7 0.445946
Target:  5'- cGGCGGCCGuGUCGcGCuCGucaGGGggGCg -3'
miRNA:   3'- cUCGCCGGC-CGGC-CG-GCua-CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 117367 0.7 0.454635
Target:  5'- gGAGCGGCgGGCCGccuGCaCGGUcgcGGcGAAGCg -3'
miRNA:   3'- -CUCGCCGgCCGGC---CG-GCUA---CC-CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 118270 0.66 0.661801
Target:  5'- gGGGCGGCgGcGCCGGCgucgGGGAc-- -3'
miRNA:   3'- -CUCGCCGgC-CGGCCGgcuaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 118980 0.68 0.555472
Target:  5'- uGGCGGagcaCGuCCGGgCGcgGGGAGACg -3'
miRNA:   3'- cUCGCCg---GCcGGCCgGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 119546 0.66 0.681119
Target:  5'- -cGCGGCCGucGCCGGCCacGUGucccGGAGCg -3'
miRNA:   3'- cuCGCCGGC--CGGCCGGc-UACc---CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 120997 0.72 0.334985
Target:  5'- cGGCGGCgGGCCauGGCCGA-GGGucGGCc -3'
miRNA:   3'- cUCGCCGgCCGG--CCGGCUaCCCu-UUG- -5'
10842 5' -62.1 NC_002794.1 + 121317 0.66 0.684967
Target:  5'- cGGCGGuuGGCCcucgaggcgccgcgcGGCUGAgaaaccGGGAAGu -3'
miRNA:   3'- cUCGCCggCCGG---------------CCGGCUa-----CCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 121370 0.66 0.709804
Target:  5'- cGGCGuCCGaGCCGGCCGccgccGGGAc-- -3'
miRNA:   3'- cUCGCcGGC-CGGCCGGCua---CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 123451 0.66 0.684967
Target:  5'- cGAGCGGCUGGCCGaGCaccuguacuacgaggCGcUGcGGAccAGCg -3'
miRNA:   3'- -CUCGCCGGCCGGC-CG---------------GCuAC-CCU--UUG- -5'
10842 5' -62.1 NC_002794.1 + 125849 0.7 0.481234
Target:  5'- -cGCuGCCGGCUggacaagcgGGCCGuGUGGGAGAg -3'
miRNA:   3'- cuCGcCGGCCGG---------CCGGC-UACCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 126265 0.71 0.40395
Target:  5'- cGGCGGCUGGCUGGCgGcgcUGGGcuuGCu -3'
miRNA:   3'- cUCGCCGGCCGGCCGgCu--ACCCuu-UG- -5'
10842 5' -62.1 NC_002794.1 + 128761 0.67 0.63268
Target:  5'- aGAGCGGuCCGGUCagGGCCgGGUGGa---- -3'
miRNA:   3'- -CUCGCC-GGCCGG--CCGG-CUACCcuuug -5'
10842 5' -62.1 NC_002794.1 + 129075 0.69 0.49938
Target:  5'- -cGCGGCUGGCggCGGaccguCCGGUGGGuGGACu -3'
miRNA:   3'- cuCGCCGGCCG--GCC-----GGCUACCC-UUUG- -5'
10842 5' -62.1 NC_002794.1 + 130661 0.7 0.480335
Target:  5'- -cGCcGCCGGCCGcgggcuccGCCGcggccucGUGGGAGGCg -3'
miRNA:   3'- cuCGcCGGCCGGC--------CGGC-------UACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 131037 0.71 0.418782
Target:  5'- -cGCGGCCGGCUGccGCCGAUGuucgucgacgacGAGACg -3'
miRNA:   3'- cuCGCCGGCCGGC--CGGCUACc-----------CUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.