miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 149700 0.67 0.652107
Target:  5'- cGGgGGCCGcCUGGCgGGUGGGccGCc -3'
miRNA:   3'- cUCgCCGGCcGGCCGgCUACCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 149281 0.66 0.661801
Target:  5'- cGGCGGCgCGG-CGGCuCGcucacGGGggGCg -3'
miRNA:   3'- cUCGCCG-GCCgGCCG-GCua---CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 147214 0.66 0.719257
Target:  5'- cGGGCcggGGCCGGggcgUUGGCgCGAUGGGcccgaGAGCa -3'
miRNA:   3'- -CUCG---CCGGCC----GGCCG-GCUACCC-----UUUG- -5'
10842 5' -62.1 NC_002794.1 + 146876 0.69 0.490268
Target:  5'- uGGGgGGCgCGGUCGGCCGAUGa----- -3'
miRNA:   3'- -CUCgCCG-GCCGGCCGGCUACccuuug -5'
10842 5' -62.1 NC_002794.1 + 145926 0.66 0.671475
Target:  5'- cGAGCGGaggGGCCGGCgagagCGGUucGGGAGucGCg -3'
miRNA:   3'- -CUCGCCgg-CCGGCCG-----GCUA--CCCUU--UG- -5'
10842 5' -62.1 NC_002794.1 + 145587 0.67 0.652107
Target:  5'- gGAGCGG-CGGCCGGCUcccgcgGAgucGGGcgcGACg -3'
miRNA:   3'- -CUCGCCgGCCGGCCGG------CUa--CCCu--UUG- -5'
10842 5' -62.1 NC_002794.1 + 143726 0.66 0.671475
Target:  5'- cGGGCGucguccucgcccGCCGGaCGcGCCGccGGGggGCu -3'
miRNA:   3'- -CUCGC------------CGGCCgGC-CGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 143473 0.66 0.700292
Target:  5'- uGAaCGGCUGGCagacgaugucgcUGGCCGcgGGGcuGCa -3'
miRNA:   3'- -CUcGCCGGCCG------------GCCGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 143023 0.66 0.690728
Target:  5'- -uGCGGUCGGCCGGgUCGAcgugcaGGGccGCc -3'
miRNA:   3'- cuCGCCGGCCGGCC-GGCUa-----CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 142208 0.67 0.613253
Target:  5'- aAGCGGCggCGGCagCGGCgGugcGGGGAGCg -3'
miRNA:   3'- cUCGCCG--GCCG--GCCGgCua-CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 142130 0.66 0.700292
Target:  5'- cGGCGGCCGaCC-GCCGGgucacgGcGGAGGCg -3'
miRNA:   3'- cUCGCCGGCcGGcCGGCUa-----C-CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 141651 0.66 0.719257
Target:  5'- -cGUGGCCgcGGCC-GCCGgcGGGucGAGCg -3'
miRNA:   3'- cuCGCCGG--CCGGcCGGCuaCCC--UUUG- -5'
10842 5' -62.1 NC_002794.1 + 141605 0.66 0.709804
Target:  5'- cGGGCGGCuCGGCgacCGGCucgcggucuagCGAcGGGAAGg -3'
miRNA:   3'- -CUCGCCG-GCCG---GCCG-----------GCUaCCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 141304 0.68 0.571721
Target:  5'- uGGCGcGCCGGCgacggcaccggcguCGGCuCGGUGGcGAGCg -3'
miRNA:   3'- cUCGC-CGGCCG--------------GCCG-GCUACCcUUUG- -5'
10842 5' -62.1 NC_002794.1 + 140119 0.76 0.194591
Target:  5'- cGGCGGUcgaCGGUgGGCgGGUGGGGAACg -3'
miRNA:   3'- cUCGCCG---GCCGgCCGgCUACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 140028 0.66 0.719257
Target:  5'- -cGCGGCCcccGCgGG-CGgcGGGAGACa -3'
miRNA:   3'- cuCGCCGGc--CGgCCgGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 139849 0.66 0.700292
Target:  5'- uGAGCGGgaGGCCGacGCUGAUGacGAGCa -3'
miRNA:   3'- -CUCGCCggCCGGC--CGGCUACccUUUG- -5'
10842 5' -62.1 NC_002794.1 + 138770 0.66 0.671475
Target:  5'- -cGCGG-CGGUCGGUgGAgGGGAGGg -3'
miRNA:   3'- cuCGCCgGCCGGCCGgCUaCCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 138708 0.66 0.719257
Target:  5'- aGGGCGGCguggacucgcguCGaGCCGGCuCGAcGGGGu-- -3'
miRNA:   3'- -CUCGCCG------------GC-CGGCCG-GCUaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 135560 0.67 0.613253
Target:  5'- uAGgGGCgcaGGCCGGCgacCGAUcGGAAACg -3'
miRNA:   3'- cUCgCCGg--CCGGCCG---GCUAcCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.