miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 150211 0.66 0.709804
Target:  5'- cGAGCGGCUGcuGCCGaGCUGcGUGcgacggcagcuGGAAGCg -3'
miRNA:   3'- -CUCGCCGGC--CGGC-CGGC-UAC-----------CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 110459 0.66 0.719257
Target:  5'- cGGCGaGCCGGCucguCGGCuCGggGGGuAGAg -3'
miRNA:   3'- cUCGC-CGGCCG----GCCG-GCuaCCC-UUUg -5'
10842 5' -62.1 NC_002794.1 + 189572 0.66 0.719257
Target:  5'- --uCGGUCGGCCGGCCc--GGGccGGCg -3'
miRNA:   3'- cucGCCGGCCGGCCGGcuaCCCu-UUG- -5'
10842 5' -62.1 NC_002794.1 + 141651 0.66 0.719257
Target:  5'- -cGUGGCCgcGGCC-GCCGgcGGGucGAGCg -3'
miRNA:   3'- cuCGCCGG--CCGGcCGGCuaCCC--UUUG- -5'
10842 5' -62.1 NC_002794.1 + 140028 0.66 0.719257
Target:  5'- -cGCGGCCcccGCgGG-CGgcGGGAGACa -3'
miRNA:   3'- cuCGCCGGc--CGgCCgGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 142130 0.66 0.700292
Target:  5'- cGGCGGCCGaCC-GCCGGgucacgGcGGAGGCg -3'
miRNA:   3'- cUCGCCGGCcGGcCGGCUa-----C-CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 182315 0.66 0.700292
Target:  5'- cGGGCGGaCGGgCGGUCGGgcgggcGGGcGAGCg -3'
miRNA:   3'- -CUCGCCgGCCgGCCGGCUa-----CCC-UUUG- -5'
10842 5' -62.1 NC_002794.1 + 1175 0.66 0.674372
Target:  5'- uGGGCGGgguuccgcccacccaCCGGCCauauaagGGCCGAUcGGGGc-- -3'
miRNA:   3'- -CUCGCC---------------GGCCGG-------CCGGCUA-CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 110277 0.66 0.684967
Target:  5'- cGGCGGCC-GCCGuccucgggcccgagaGCCGcgGGGAc-- -3'
miRNA:   3'- cUCGCCGGcCGGC---------------CGGCuaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 119546 0.66 0.681119
Target:  5'- -cGCGGCCGucGCCGGCCacGUGucccGGAGCg -3'
miRNA:   3'- cuCGCCGGC--CGGCCGGc-UACc---CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 21866 0.66 0.681119
Target:  5'- uGAaCGGUCcgcgaGGCCGGCCGcgGGGuguccGCg -3'
miRNA:   3'- -CUcGCCGG-----CCGGCCGGCuaCCCuu---UG- -5'
10842 5' -62.1 NC_002794.1 + 143023 0.66 0.690728
Target:  5'- -uGCGGUCGGCCGGgUCGAcgugcaGGGccGCc -3'
miRNA:   3'- cuCGCCGGCCGGCC-GGCUa-----CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 10959 0.66 0.690728
Target:  5'- gGAGgGGCCGGCCGagacguCCGAUGccugcuccGAGGCc -3'
miRNA:   3'- -CUCgCCGGCCGGCc-----GGCUACc-------CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 123451 0.66 0.684967
Target:  5'- cGAGCGGCUGGCCGaGCaccuguacuacgaggCGcUGcGGAccAGCg -3'
miRNA:   3'- -CUCGCCGGCCGGC-CG---------------GCuAC-CCU--UUG- -5'
10842 5' -62.1 NC_002794.1 + 121317 0.66 0.684967
Target:  5'- cGGCGGuuGGCCcucgaggcgccgcgcGGCUGAgaaaccGGGAAGu -3'
miRNA:   3'- cUCGCCggCCGG---------------CCGGCUa-----CCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 80443 0.66 0.690728
Target:  5'- cGGCGGCC-GCCGGCCcGUcGGcgGCc -3'
miRNA:   3'- cUCGCCGGcCGGCCGGcUAcCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 71403 0.66 0.700292
Target:  5'- -uGCGGCUcgGGCCGGCCGucguccagcGUGGa---- -3'
miRNA:   3'- cuCGCCGG--CCGGCCGGC---------UACCcuuug -5'
10842 5' -62.1 NC_002794.1 + 100798 0.66 0.694559
Target:  5'- -cGCGGCCGcuucugcgccuacguGCCGGgCGgcGGGGgccGGCa -3'
miRNA:   3'- cuCGCCGGC---------------CGGCCgGCuaCCCU---UUG- -5'
10842 5' -62.1 NC_002794.1 + 139849 0.66 0.700292
Target:  5'- uGAGCGGgaGGCCGacGCUGAUGacGAGCa -3'
miRNA:   3'- -CUCGCCggCCGGC--CGGCUACccUUUG- -5'
10842 5' -62.1 NC_002794.1 + 143473 0.66 0.700292
Target:  5'- uGAaCGGCUGGCagacgaugucgcUGGCCGcgGGGcuGCa -3'
miRNA:   3'- -CUcGCCGGCCG------------GCCGGCuaCCCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.