Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 5' | -62.1 | NC_002794.1 | + | 71403 | 0.66 | 0.700292 |
Target: 5'- -uGCGGCUcgGGCCGGCCGucguccagcGUGGa---- -3' miRNA: 3'- cuCGCCGG--CCGGCCGGC---------UACCcuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 80443 | 0.66 | 0.690728 |
Target: 5'- cGGCGGCC-GCCGGCCcGUcGGcgGCc -3' miRNA: 3'- cUCGCCGGcCGGCCGGcUAcCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 138770 | 0.66 | 0.671475 |
Target: 5'- -cGCGG-CGGUCGGUgGAgGGGAGGg -3' miRNA: 3'- cuCGCCgGCCGGCCGgCUaCCCUUUg -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 143726 | 0.66 | 0.671475 |
Target: 5'- cGGGCGucguccucgcccGCCGGaCGcGCCGccGGGggGCu -3' miRNA: 3'- -CUCGC------------CGGCCgGC-CGGCuaCCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 149281 | 0.66 | 0.661801 |
Target: 5'- cGGCGGCgCGG-CGGCuCGcucacGGGggGCg -3' miRNA: 3'- cUCGCCG-GCCgGCCG-GCua---CCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 116365 | 0.66 | 0.671475 |
Target: 5'- -cGCGGuCCGaCCGGUCGGUGGcguGCg -3' miRNA: 3'- cuCGCC-GGCcGGCCGGCUACCcuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 118270 | 0.66 | 0.661801 |
Target: 5'- gGGGCGGCgGcGCCGGCgucgGGGAc-- -3' miRNA: 3'- -CUCGCCGgC-CGGCCGgcuaCCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 692 | 0.66 | 0.661801 |
Target: 5'- -cGCGGCCGGaguCGGCUGuuuuUGGGc--- -3' miRNA: 3'- cuCGCCGGCCg--GCCGGCu---ACCCuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 145587 | 0.67 | 0.652107 |
Target: 5'- gGAGCGG-CGGCCGGCUcccgcgGAgucGGGcgcGACg -3' miRNA: 3'- -CUCGCCgGCCGGCCGG------CUa--CCCu--UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 149700 | 0.67 | 0.652107 |
Target: 5'- cGGgGGCCGcCUGGCgGGUGGGccGCc -3' miRNA: 3'- cUCgCCGGCcGGCCGgCUACCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 145926 | 0.66 | 0.671475 |
Target: 5'- cGAGCGGaggGGCCGGCgagagCGGUucGGGAGucGCg -3' miRNA: 3'- -CUCGCCgg-CCGGCCG-----GCUA--CCCUU--UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 182965 | 0.66 | 0.681119 |
Target: 5'- cGGCGGCCGGCuccucguuCGaGCCGAcGGccGGCg -3' miRNA: 3'- cUCGCCGGCCG--------GC-CGGCUaCCcuUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 121317 | 0.66 | 0.684967 |
Target: 5'- cGGCGGuuGGCCcucgaggcgccgcgcGGCUGAgaaaccGGGAAGu -3' miRNA: 3'- cUCGCCggCCGG---------------CCGGCUa-----CCCUUUg -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 123451 | 0.66 | 0.684967 |
Target: 5'- cGAGCGGCUGGCCGaGCaccuguacuacgaggCGcUGcGGAccAGCg -3' miRNA: 3'- -CUCGCCGGCCGGC-CG---------------GCuAC-CCU--UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 10959 | 0.66 | 0.690728 |
Target: 5'- gGAGgGGCCGGCCGagacguCCGAUGccugcuccGAGGCc -3' miRNA: 3'- -CUCgCCGGCCGGCc-----GGCUACc-------CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 143023 | 0.66 | 0.690728 |
Target: 5'- -uGCGGUCGGCCGGgUCGAcgugcaGGGccGCc -3' miRNA: 3'- cuCGCCGGCCGGCC-GGCUa-----CCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 21866 | 0.66 | 0.681119 |
Target: 5'- uGAaCGGUCcgcgaGGCCGGCCGcgGGGuguccGCg -3' miRNA: 3'- -CUcGCCGG-----CCGGCCGGCuaCCCuu---UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 119546 | 0.66 | 0.681119 |
Target: 5'- -cGCGGCCGucGCCGGCCacGUGucccGGAGCg -3' miRNA: 3'- cuCGCCGGC--CGGCCGGc-UACc---CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 110277 | 0.66 | 0.684967 |
Target: 5'- cGGCGGCC-GCCGuccucgggcccgagaGCCGcgGGGAc-- -3' miRNA: 3'- cUCGCCGGcCGGC---------------CGGCuaCCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 1175 | 0.66 | 0.674372 |
Target: 5'- uGGGCGGgguuccgcccacccaCCGGCCauauaagGGCCGAUcGGGGc-- -3' miRNA: 3'- -CUCGCC---------------GGCCGG-------CCGGCUA-CCCUuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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