Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 5' | -62.1 | NC_002794.1 | + | 150211 | 0.66 | 0.709804 |
Target: 5'- cGAGCGGCUGcuGCCGaGCUGcGUGcgacggcagcuGGAAGCg -3' miRNA: 3'- -CUCGCCGGC--CGGC-CGGC-UAC-----------CCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 110459 | 0.66 | 0.719257 |
Target: 5'- cGGCGaGCCGGCucguCGGCuCGggGGGuAGAg -3' miRNA: 3'- cUCGC-CGGCCG----GCCG-GCuaCCC-UUUg -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 189572 | 0.66 | 0.719257 |
Target: 5'- --uCGGUCGGCCGGCCc--GGGccGGCg -3' miRNA: 3'- cucGCCGGCCGGCCGGcuaCCCu-UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 141651 | 0.66 | 0.719257 |
Target: 5'- -cGUGGCCgcGGCC-GCCGgcGGGucGAGCg -3' miRNA: 3'- cuCGCCGG--CCGGcCGGCuaCCC--UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 140028 | 0.66 | 0.719257 |
Target: 5'- -cGCGGCCcccGCgGG-CGgcGGGAGACa -3' miRNA: 3'- cuCGCCGGc--CGgCCgGCuaCCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 142130 | 0.66 | 0.700292 |
Target: 5'- cGGCGGCCGaCC-GCCGGgucacgGcGGAGGCg -3' miRNA: 3'- cUCGCCGGCcGGcCGGCUa-----C-CCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 182315 | 0.66 | 0.700292 |
Target: 5'- cGGGCGGaCGGgCGGUCGGgcgggcGGGcGAGCg -3' miRNA: 3'- -CUCGCCgGCCgGCCGGCUa-----CCC-UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 1175 | 0.66 | 0.674372 |
Target: 5'- uGGGCGGgguuccgcccacccaCCGGCCauauaagGGCCGAUcGGGGc-- -3' miRNA: 3'- -CUCGCC---------------GGCCGG-------CCGGCUA-CCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 110277 | 0.66 | 0.684967 |
Target: 5'- cGGCGGCC-GCCGuccucgggcccgagaGCCGcgGGGAc-- -3' miRNA: 3'- cUCGCCGGcCGGC---------------CGGCuaCCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 119546 | 0.66 | 0.681119 |
Target: 5'- -cGCGGCCGucGCCGGCCacGUGucccGGAGCg -3' miRNA: 3'- cuCGCCGGC--CGGCCGGc-UACc---CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 21866 | 0.66 | 0.681119 |
Target: 5'- uGAaCGGUCcgcgaGGCCGGCCGcgGGGuguccGCg -3' miRNA: 3'- -CUcGCCGG-----CCGGCCGGCuaCCCuu---UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 143023 | 0.66 | 0.690728 |
Target: 5'- -uGCGGUCGGCCGGgUCGAcgugcaGGGccGCc -3' miRNA: 3'- cuCGCCGGCCGGCC-GGCUa-----CCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 10959 | 0.66 | 0.690728 |
Target: 5'- gGAGgGGCCGGCCGagacguCCGAUGccugcuccGAGGCc -3' miRNA: 3'- -CUCgCCGGCCGGCc-----GGCUACc-------CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 123451 | 0.66 | 0.684967 |
Target: 5'- cGAGCGGCUGGCCGaGCaccuguacuacgaggCGcUGcGGAccAGCg -3' miRNA: 3'- -CUCGCCGGCCGGC-CG---------------GCuAC-CCU--UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 121317 | 0.66 | 0.684967 |
Target: 5'- cGGCGGuuGGCCcucgaggcgccgcgcGGCUGAgaaaccGGGAAGu -3' miRNA: 3'- cUCGCCggCCGG---------------CCGGCUa-----CCCUUUg -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 80443 | 0.66 | 0.690728 |
Target: 5'- cGGCGGCC-GCCGGCCcGUcGGcgGCc -3' miRNA: 3'- cUCGCCGGcCGGCCGGcUAcCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 71403 | 0.66 | 0.700292 |
Target: 5'- -uGCGGCUcgGGCCGGCCGucguccagcGUGGa---- -3' miRNA: 3'- cuCGCCGG--CCGGCCGGC---------UACCcuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 100798 | 0.66 | 0.694559 |
Target: 5'- -cGCGGCCGcuucugcgccuacguGCCGGgCGgcGGGGgccGGCa -3' miRNA: 3'- cuCGCCGGC---------------CGGCCgGCuaCCCU---UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 139849 | 0.66 | 0.700292 |
Target: 5'- uGAGCGGgaGGCCGacGCUGAUGacGAGCa -3' miRNA: 3'- -CUCGCCggCCGGC--CGGCUACccUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 143473 | 0.66 | 0.700292 |
Target: 5'- uGAaCGGCUGGCagacgaugucgcUGGCCGcgGGGcuGCa -3' miRNA: 3'- -CUcGCCGGCCG------------GCCGGCuaCCCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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