miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10843 3' -53.6 NC_002794.1 + 115980 0.66 0.982949
Target:  5'- cGGGACGGGGAGCggcgCCGCggagACCGCg--- -3'
miRNA:   3'- -UCUUGCUCUUUGa---GGCG----UGGUGggag -5'
10843 3' -53.6 NC_002794.1 + 19674 0.66 0.982949
Target:  5'- ----gGAGuuuCUCCGCuACCGCCCg- -3'
miRNA:   3'- ucuugCUCuuuGAGGCG-UGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 62725 0.66 0.982949
Target:  5'- -cAGCGAGAcgcACUUCcCGCCGCCCg- -3'
miRNA:   3'- ucUUGCUCUu--UGAGGcGUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 110337 0.66 0.982949
Target:  5'- cGcGCGGGggGuCUCCGCcgugGCgACgCCUCg -3'
miRNA:   3'- uCuUGCUCuuU-GAGGCG----UGgUG-GGAG- -5'
10843 3' -53.6 NC_002794.1 + 76107 0.66 0.982949
Target:  5'- --cGCG-GAucACUCCGaC-CCGCCCUCu -3'
miRNA:   3'- ucuUGCuCUu-UGAGGC-GuGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 184097 0.66 0.982949
Target:  5'- cAGAACGGcGAACgcgCCaGCGCC-CCgCUCg -3'
miRNA:   3'- -UCUUGCUcUUUGa--GG-CGUGGuGG-GAG- -5'
10843 3' -53.6 NC_002794.1 + 78055 0.66 0.982754
Target:  5'- cAGAACGccc-GCcgCCGCccgaacgccggccGCCGCCCUCg -3'
miRNA:   3'- -UCUUGCucuuUGa-GGCG-------------UGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 18264 0.66 0.981757
Target:  5'- cGAccGCGAGAuGCgcggcgCCGagccuucgaaccgaGCCGCCCUCu -3'
miRNA:   3'- uCU--UGCUCUuUGa-----GGCg-------------UGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 51677 0.66 0.980929
Target:  5'- ---cCGAGAAAC-CCGaCGCCACCg-- -3'
miRNA:   3'- ucuuGCUCUUUGaGGC-GUGGUGGgag -5'
10843 3' -53.6 NC_002794.1 + 105687 0.66 0.980929
Target:  5'- gGGAACGucGGAACcgCCGuCGCCuCCgCUCg -3'
miRNA:   3'- -UCUUGCu-CUUUGa-GGC-GUGGuGG-GAG- -5'
10843 3' -53.6 NC_002794.1 + 34461 0.66 0.980929
Target:  5'- gAGGACGAGu-AC-CUGCG-CACCUUCa -3'
miRNA:   3'- -UCUUGCUCuuUGaGGCGUgGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 8545 0.66 0.980929
Target:  5'- gGGAGC-AGAccgUCCGCGCCugCCg- -3'
miRNA:   3'- -UCUUGcUCUuugAGGCGUGGugGGag -5'
10843 3' -53.6 NC_002794.1 + 100823 0.66 0.980717
Target:  5'- cGGGCGgcGGggGCcggcagccgggcuUCCGCACCGCgcagacgaagguCCUCa -3'
miRNA:   3'- uCUUGC--UCuuUG-------------AGGCGUGGUG------------GGAG- -5'
10843 3' -53.6 NC_002794.1 + 150099 0.66 0.978735
Target:  5'- cGGAGCGuGAGGCcggaGCGCCGCUCg- -3'
miRNA:   3'- -UCUUGCuCUUUGagg-CGUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 101764 0.66 0.978735
Target:  5'- --cGCGAGAAcgUCCGCGcguCCAUCCUg -3'
miRNA:   3'- ucuUGCUCUUugAGGCGU---GGUGGGAg -5'
10843 3' -53.6 NC_002794.1 + 23472 0.66 0.978505
Target:  5'- cGGGGCgGAGggGuCUgccaugaUCGCGCCGCCgUCu -3'
miRNA:   3'- -UCUUG-CUCuuU-GA-------GGCGUGGUGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 191627 0.66 0.976359
Target:  5'- cGAACGGGGu-UUCCGCcUCGCCgUCc -3'
miRNA:   3'- uCUUGCUCUuuGAGGCGuGGUGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 44276 0.66 0.976359
Target:  5'- gGGGACGGaGGAgUCCGCGCCcGCCg-- -3'
miRNA:   3'- -UCUUGCUcUUUgAGGCGUGG-UGGgag -5'
10843 3' -53.6 NC_002794.1 + 123876 0.66 0.973795
Target:  5'- cGAGCGGGuccAGCugcugcguUCCGC-CCGCCCg- -3'
miRNA:   3'- uCUUGCUCu--UUG--------AGGCGuGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 6046 0.66 0.973795
Target:  5'- -aAGCG-GAGACUCUGaacgaCACCCUCu -3'
miRNA:   3'- ucUUGCuCUUUGAGGCgug--GUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.