miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10843 3' -53.6 NC_002794.1 + 50948 1.1 0.005629
Target:  5'- aAGAACGAGAAACUCCGCACCACCCUCu -3'
miRNA:   3'- -UCUUGCUCUUUGAGGCGUGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 149855 0.76 0.554194
Target:  5'- gGGGACGAGGAGCggCCGC-CCGCUCg- -3'
miRNA:   3'- -UCUUGCUCUUUGa-GGCGuGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 52641 0.76 0.568304
Target:  5'- cGAACGGGAGccggagcggcggcagGCUCUGCGCCACCg-- -3'
miRNA:   3'- uCUUGCUCUU---------------UGAGGCGUGGUGGgag -5'
10843 3' -53.6 NC_002794.1 + 190578 0.76 0.57438
Target:  5'- cGAACGGGuAGCUCuCGCGCCGCagcuCCUCc -3'
miRNA:   3'- uCUUGCUCuUUGAG-GCGUGGUG----GGAG- -5'
10843 3' -53.6 NC_002794.1 + 115294 0.76 0.59473
Target:  5'- gGGAACGGGGAcCgCUGCGCCGCCgUCc -3'
miRNA:   3'- -UCUUGCUCUUuGaGGCGUGGUGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 120165 0.75 0.61519
Target:  5'- aGGAccuCGAGAucCUCCGCGCCGCCaagCg -3'
miRNA:   3'- -UCUu--GCUCUuuGAGGCGUGGUGGga-G- -5'
10843 3' -53.6 NC_002794.1 + 128110 0.75 0.656201
Target:  5'- -cGACGGGggGCUCgGCGgaUACCCUCa -3'
miRNA:   3'- ucUUGCUCuuUGAGgCGUg-GUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 87393 0.73 0.72688
Target:  5'- cAGAGCGAGccgcauuuauAGGCUuaGCGCCGCCCa- -3'
miRNA:   3'- -UCUUGCUC----------UUUGAggCGUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 108190 0.72 0.784375
Target:  5'- cGGAcuGCGAGcgGCgcugcgccgCCGCGCCGgCCUCg -3'
miRNA:   3'- -UCU--UGCUCuuUGa--------GGCGUGGUgGGAG- -5'
10843 3' -53.6 NC_002794.1 + 42239 0.72 0.811392
Target:  5'- gAGAcggcgGCGAcGAACUCCGagcccgcuCCGCCCUCg -3'
miRNA:   3'- -UCU-----UGCUcUUUGAGGCgu------GGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 82709 0.72 0.811392
Target:  5'- gAGAcgcgcCGAGGAcg-CCGCGCCACCaCUCg -3'
miRNA:   3'- -UCUu----GCUCUUugaGGCGUGGUGG-GAG- -5'
10843 3' -53.6 NC_002794.1 + 62213 0.72 0.811392
Target:  5'- cGGGACGcccAGAAACUCUGCAuccuCCGCCUg- -3'
miRNA:   3'- -UCUUGC---UCUUUGAGGCGU----GGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 45921 0.72 0.811392
Target:  5'- cGGGCGAcGAGGCUCgCGCuuccCCGCCCg- -3'
miRNA:   3'- uCUUGCU-CUUUGAG-GCGu---GGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 63587 0.71 0.828601
Target:  5'- cGGGAgGuGAAGCuccUCCGCACCggACUCUCg -3'
miRNA:   3'- -UCUUgCuCUUUG---AGGCGUGG--UGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 68031 0.71 0.836114
Target:  5'- ---cCGAGAGGCUgcuguccggacagCCGUugACCGCCCUCa -3'
miRNA:   3'- ucuuGCUCUUUGA-------------GGCG--UGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 108392 0.71 0.83694
Target:  5'- gGGAGCG-GAGGCUCCggcgGCGgCGCCCa- -3'
miRNA:   3'- -UCUUGCuCUUUGAGG----CGUgGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 1175 0.71 0.85305
Target:  5'- uGGGCGGGG--UUCCGC-CCACCCa- -3'
miRNA:   3'- uCUUGCUCUuuGAGGCGuGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 78024 0.7 0.860806
Target:  5'- ---uCGGGAGAacgcCCGcCGCCGCCCUCg -3'
miRNA:   3'- ucuuGCUCUUUga--GGC-GUGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 1358 0.7 0.875692
Target:  5'- uGAACGGGggGCguguUCCGgaCACCAUCCg- -3'
miRNA:   3'- uCUUGCUCuuUG----AGGC--GUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 86147 0.7 0.875692
Target:  5'- cGGGACG-GAuGCUCCGgGCCACgCC-Cg -3'
miRNA:   3'- -UCUUGCuCUuUGAGGCgUGGUG-GGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.