miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10843 3' -53.6 NC_002794.1 + 123876 0.66 0.973795
Target:  5'- cGAGCGGGuccAGCugcugcguUCCGC-CCGCCCg- -3'
miRNA:   3'- uCUUGCUCu--UUG--------AGGCGuGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 2353 0.66 0.973795
Target:  5'- cGGAC---AGGCUCuCGCcCCACCCUCc -3'
miRNA:   3'- uCUUGcucUUUGAG-GCGuGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 17039 0.66 0.972163
Target:  5'- uGGAACuGAGAccCUCCGCgACCuguccgggcguaccgACCUUCa -3'
miRNA:   3'- -UCUUG-CUCUuuGAGGCG-UGG---------------UGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 99543 0.66 0.971034
Target:  5'- --uGCGGGccGCggaaaCCGCGCgCGCCCUCc -3'
miRNA:   3'- ucuUGCUCuuUGa----GGCGUG-GUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 65414 0.66 0.971034
Target:  5'- --cGCGcGGAGACgcgcCUGC-CCACCCUCc -3'
miRNA:   3'- ucuUGC-UCUUUGa---GGCGuGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 52721 0.66 0.971034
Target:  5'- uAGAGCGuGGucugCCGCACC-CCCa- -3'
miRNA:   3'- -UCUUGCuCUuugaGGCGUGGuGGGag -5'
10843 3' -53.6 NC_002794.1 + 141881 0.67 0.969281
Target:  5'- cGGACGAaAGACUCCucccguccaggcgacGCGCCGuuCUCg -3'
miRNA:   3'- uCUUGCUcUUUGAGG---------------CGUGGUggGAG- -5'
10843 3' -53.6 NC_002794.1 + 132863 0.67 0.969281
Target:  5'- cGAACGAcuGAagucgaaucuaccggAAUcCCGCGCCGCCCg- -3'
miRNA:   3'- uCUUGCU--CU---------------UUGaGGCGUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 102246 0.67 0.968071
Target:  5'- gAGuuCGAGAAGCUCUuCGUCGCCCUg -3'
miRNA:   3'- -UCuuGCUCUUUGAGGcGUGGUGGGAg -5'
10843 3' -53.6 NC_002794.1 + 110300 0.67 0.968071
Target:  5'- gAGAgccGCGGGGAcuCUCCGCucGCCGCCg-- -3'
miRNA:   3'- -UCU---UGCUCUUu-GAGGCG--UGGUGGgag -5'
10843 3' -53.6 NC_002794.1 + 151771 0.67 0.968071
Target:  5'- gAGAugGAGAccGCgCCGCugCACgCCa- -3'
miRNA:   3'- -UCUugCUCUu-UGaGGCGugGUG-GGag -5'
10843 3' -53.6 NC_002794.1 + 2250 0.67 0.967764
Target:  5'- -aAACGAGGAAgUCCGaggcgacCGCCgGCCCUUa -3'
miRNA:   3'- ucUUGCUCUUUgAGGC-------GUGG-UGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 101853 0.67 0.964899
Target:  5'- gAGGACGAGAcGCgCCGC-CUGCUgCUCg -3'
miRNA:   3'- -UCUUGCUCUuUGaGGCGuGGUGG-GAG- -5'
10843 3' -53.6 NC_002794.1 + 23973 0.67 0.961512
Target:  5'- -cAGCGGcGAGGC-CgGCGCCACCgUCg -3'
miRNA:   3'- ucUUGCU-CUUUGaGgCGUGGUGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 187514 0.67 0.961162
Target:  5'- cAGGGCgcccgcgGAGGAACUCCcCGCCGCCg-- -3'
miRNA:   3'- -UCUUG-------CUCUUUGAGGcGUGGUGGgag -5'
10843 3' -53.6 NC_002794.1 + 148049 0.67 0.959375
Target:  5'- cGAACG-GAucGGCUCCGCGCUcugggagccgggaguGgCCUCg -3'
miRNA:   3'- uCUUGCuCU--UUGAGGCGUGG---------------UgGGAG- -5'
10843 3' -53.6 NC_002794.1 + 12263 0.67 0.957905
Target:  5'- cGGAACGAGAcguCUCCGgGuuuCCGCgCCUg -3'
miRNA:   3'- -UCUUGCUCUuu-GAGGCgU---GGUG-GGAg -5'
10843 3' -53.6 NC_002794.1 + 6733 0.67 0.957905
Target:  5'- aGGAaauGCGGGAGAUgcaUCGuCGCCGCCCa- -3'
miRNA:   3'- -UCU---UGCUCUUUGa--GGC-GUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 95086 0.67 0.957905
Target:  5'- cAGugcuACGAGGAGCUggCCGCGgUGCCCa- -3'
miRNA:   3'- -UCu---UGCUCUUUGA--GGCGUgGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 52998 0.67 0.954074
Target:  5'- gAGAcCGuAGAGACagaUCCGCGCCAgaaaaaagUCCUCc -3'
miRNA:   3'- -UCUuGC-UCUUUG---AGGCGUGGU--------GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.