miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10843 3' -53.6 NC_002794.1 + 1175 0.71 0.85305
Target:  5'- uGGGCGGGG--UUCCGC-CCACCCa- -3'
miRNA:   3'- uCUUGCUCUuuGAGGCGuGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 1358 0.7 0.875692
Target:  5'- uGAACGGGggGCguguUCCGgaCACCAUCCg- -3'
miRNA:   3'- uCUUGCUCuuUG----AGGC--GUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 2250 0.67 0.967764
Target:  5'- -aAACGAGGAAgUCCGaggcgacCGCCgGCCCUUa -3'
miRNA:   3'- ucUUGCUCUUUgAGGC-------GUGG-UGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 2353 0.66 0.973795
Target:  5'- cGGAC---AGGCUCuCGCcCCACCCUCc -3'
miRNA:   3'- uCUUGcucUUUGAG-GCGuGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 6046 0.66 0.973795
Target:  5'- -aAGCG-GAGACUCUGaacgaCACCCUCu -3'
miRNA:   3'- ucUUGCuCUUUGAGGCgug--GUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 6733 0.67 0.957905
Target:  5'- aGGAaauGCGGGAGAUgcaUCGuCGCCGCCCa- -3'
miRNA:   3'- -UCU---UGCUCUUUGa--GGC-GUGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 7404 0.66 0.973795
Target:  5'- ----aGAGAGACUCUugGCuCCACCCa- -3'
miRNA:   3'- ucuugCUCUUUGAGG--CGuGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 8545 0.66 0.980929
Target:  5'- gGGAGC-AGAccgUCCGCGCCugCCg- -3'
miRNA:   3'- -UCUUGcUCUuugAGGCGUGGugGGag -5'
10843 3' -53.6 NC_002794.1 + 10308 0.69 0.896369
Target:  5'- -cGGCGAGAGACUCCGacgACUcgGCCgUCg -3'
miRNA:   3'- ucUUGCUCUUUGAGGCg--UGG--UGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 12263 0.67 0.957905
Target:  5'- cGGAACGAGAcguCUCCGgGuuuCCGCgCCUg -3'
miRNA:   3'- -UCUUGCUCUuu-GAGGCgU---GGUG-GGAg -5'
10843 3' -53.6 NC_002794.1 + 17039 0.66 0.972163
Target:  5'- uGGAACuGAGAccCUCCGCgACCuguccgggcguaccgACCUUCa -3'
miRNA:   3'- -UCUUG-CUCUuuGAGGCG-UGG---------------UGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 18264 0.66 0.981757
Target:  5'- cGAccGCGAGAuGCgcggcgCCGagccuucgaaccgaGCCGCCCUCu -3'
miRNA:   3'- uCU--UGCUCUuUGa-----GGCg-------------UGGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 19674 0.66 0.982949
Target:  5'- ----gGAGuuuCUCCGCuACCGCCCg- -3'
miRNA:   3'- ucuugCUCuuuGAGGCG-UGGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 23472 0.66 0.978505
Target:  5'- cGGGGCgGAGggGuCUgccaugaUCGCGCCGCCgUCu -3'
miRNA:   3'- -UCUUG-CUCuuU-GA-------GGCGUGGUGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 23973 0.67 0.961512
Target:  5'- -cAGCGGcGAGGC-CgGCGCCACCgUCg -3'
miRNA:   3'- ucUUGCU-CUUUGaGgCGUGGUGGgAG- -5'
10843 3' -53.6 NC_002794.1 + 34461 0.66 0.980929
Target:  5'- gAGGACGAGu-AC-CUGCG-CACCUUCa -3'
miRNA:   3'- -UCUUGCUCuuUGaGGCGUgGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 42239 0.72 0.811392
Target:  5'- gAGAcggcgGCGAcGAACUCCGagcccgcuCCGCCCUCg -3'
miRNA:   3'- -UCU-----UGCUcUUUGAGGCgu------GGUGGGAG- -5'
10843 3' -53.6 NC_002794.1 + 44276 0.66 0.976359
Target:  5'- gGGGACGGaGGAgUCCGCGCCcGCCg-- -3'
miRNA:   3'- -UCUUGCUcUUUgAGGCGUGG-UGGgag -5'
10843 3' -53.6 NC_002794.1 + 45921 0.72 0.811392
Target:  5'- cGGGCGAcGAGGCUCgCGCuuccCCGCCCg- -3'
miRNA:   3'- uCUUGCU-CUUUGAG-GCGu---GGUGGGag -5'
10843 3' -53.6 NC_002794.1 + 46654 0.69 0.913203
Target:  5'- -cAGCGAGGAACagcgCuCGCagucgcacaagaucGCCGCCCUCa -3'
miRNA:   3'- ucUUGCUCUUUGa---G-GCG--------------UGGUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.