miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10844 3' -58.5 NC_002794.1 + 175707 0.66 0.862907
Target:  5'- cGCCGguCAGAUCGCcacaggcGAGGaGCGUGg- -3'
miRNA:   3'- aCGGC--GUCUAGCGu------CUCCaCGCACgc -5'
10844 3' -58.5 NC_002794.1 + 152805 0.66 0.862907
Target:  5'- cUGCUGCucccGAUCG---GGGUGCcGUGCGg -3'
miRNA:   3'- -ACGGCGu---CUAGCgucUCCACG-CACGC- -5'
10844 3' -58.5 NC_002794.1 + 152665 0.66 0.862907
Target:  5'- gUGCUcgaGCAGuAUCGCGagcuGGGG-GUGUGCGc -3'
miRNA:   3'- -ACGG---CGUC-UAGCGU----CUCCaCGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 113884 0.66 0.862907
Target:  5'- gGCCGCGGcgCGCGucGGcGCGgucUGCa -3'
miRNA:   3'- aCGGCGUCuaGCGUcuCCaCGC---ACGc -5'
10844 3' -58.5 NC_002794.1 + 180912 0.66 0.862169
Target:  5'- gGCCGCGGucUCGCcggcgccgucGGAGGUcggucucGCGUccGCGg -3'
miRNA:   3'- aCGGCGUCu-AGCG----------UCUCCA-------CGCA--CGC- -5'
10844 3' -58.5 NC_002794.1 + 192147 0.66 0.855437
Target:  5'- cUGCCgGCGcGGUCGCGGcGGaGCcUGCGg -3'
miRNA:   3'- -ACGG-CGU-CUAGCGUCuCCaCGcACGC- -5'
10844 3' -58.5 NC_002794.1 + 94501 0.66 0.854679
Target:  5'- gGCCGUGGcggggaugaauacGUUGCAGAGacuGUGCGUGg- -3'
miRNA:   3'- aCGGCGUC-------------UAGCGUCUC---CACGCACgc -5'
10844 3' -58.5 NC_002794.1 + 143077 0.66 0.847775
Target:  5'- gGCgGCAGA-CGUaguGGAGGuUGCGcgGCGu -3'
miRNA:   3'- aCGgCGUCUaGCG---UCUCC-ACGCa-CGC- -5'
10844 3' -58.5 NC_002794.1 + 190621 0.66 0.847775
Target:  5'- aGCCGCAGGUucgacucgcCGUAGcccGGcGUGUGCa -3'
miRNA:   3'- aCGGCGUCUA---------GCGUCu--CCaCGCACGc -5'
10844 3' -58.5 NC_002794.1 + 94048 0.66 0.839928
Target:  5'- aGCgGCGGcggUGCGGGGGcgGCGggggGCGa -3'
miRNA:   3'- aCGgCGUCua-GCGUCUCCa-CGCa---CGC- -5'
10844 3' -58.5 NC_002794.1 + 107221 0.66 0.839928
Target:  5'- cGCCggGCGGcgCGCGacGGGGgcgGCGUcGCGg -3'
miRNA:   3'- aCGG--CGUCuaGCGU--CUCCa--CGCA-CGC- -5'
10844 3' -58.5 NC_002794.1 + 149346 0.66 0.831903
Target:  5'- gGCCG-GGGUCGCGG-GG-GCGUGg- -3'
miRNA:   3'- aCGGCgUCUAGCGUCuCCaCGCACgc -5'
10844 3' -58.5 NC_002794.1 + 115948 0.67 0.823705
Target:  5'- cGCCGCGuGUCGCcGGGGacCGUGgGg -3'
miRNA:   3'- aCGGCGUcUAGCGuCUCCacGCACgC- -5'
10844 3' -58.5 NC_002794.1 + 94999 0.67 0.806823
Target:  5'- cGCCGCuugcuGUCGCugauGGGGcgGCuGUGCGg -3'
miRNA:   3'- aCGGCGuc---UAGCGu---CUCCa-CG-CACGC- -5'
10844 3' -58.5 NC_002794.1 + 91126 0.67 0.806823
Target:  5'- gUGCCGUgcguGGAggaggCGCGGAcGGUGC-UGCu -3'
miRNA:   3'- -ACGGCG----UCUa----GCGUCU-CCACGcACGc -5'
10844 3' -58.5 NC_002794.1 + 34739 0.67 0.806823
Target:  5'- gGCCGCAGAgcgcgcgacggCGCGGuGGgacGCG-GCa -3'
miRNA:   3'- aCGGCGUCUa----------GCGUCuCCa--CGCaCGc -5'
10844 3' -58.5 NC_002794.1 + 77202 0.67 0.789342
Target:  5'- cGCCGCccGUCGC--AGGUGCGcuUGCa -3'
miRNA:   3'- aCGGCGucUAGCGucUCCACGC--ACGc -5'
10844 3' -58.5 NC_002794.1 + 31806 0.67 0.789342
Target:  5'- aUGUacuucaGCAGAUCGCugaagucGAGGUcCGUGCa -3'
miRNA:   3'- -ACGg-----CGUCUAGCGu------CUCCAcGCACGc -5'
10844 3' -58.5 NC_002794.1 + 55302 0.67 0.780397
Target:  5'- gGCgGCGGcGUCGCGGcGGGcGCGgGCGg -3'
miRNA:   3'- aCGgCGUC-UAGCGUC-UCCaCGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 71347 0.67 0.780397
Target:  5'- cGuCCGcCAGGcggCGCAGcAGGUGCG-GCa -3'
miRNA:   3'- aC-GGC-GUCUa--GCGUC-UCCACGCaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.