Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 175707 | 0.66 | 0.862907 |
Target: 5'- cGCCGguCAGAUCGCcacaggcGAGGaGCGUGg- -3' miRNA: 3'- aCGGC--GUCUAGCGu------CUCCaCGCACgc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 94048 | 0.66 | 0.839928 |
Target: 5'- aGCgGCGGcggUGCGGGGGcgGCGggggGCGa -3' miRNA: 3'- aCGgCGUCua-GCGUCUCCa-CGCa---CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 107221 | 0.66 | 0.839928 |
Target: 5'- cGCCggGCGGcgCGCGacGGGGgcgGCGUcGCGg -3' miRNA: 3'- aCGG--CGUCuaGCGU--CUCCa--CGCA-CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 149346 | 0.66 | 0.831903 |
Target: 5'- gGCCG-GGGUCGCGG-GG-GCGUGg- -3' miRNA: 3'- aCGGCgUCUAGCGUCuCCaCGCACgc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 190621 | 0.66 | 0.847775 |
Target: 5'- aGCCGCAGGUucgacucgcCGUAGcccGGcGUGUGCa -3' miRNA: 3'- aCGGCGUCUA---------GCGUCu--CCaCGCACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 143077 | 0.66 | 0.847775 |
Target: 5'- gGCgGCAGA-CGUaguGGAGGuUGCGcgGCGu -3' miRNA: 3'- aCGgCGUCUaGCG---UCUCC-ACGCa-CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 94501 | 0.66 | 0.854679 |
Target: 5'- gGCCGUGGcggggaugaauacGUUGCAGAGacuGUGCGUGg- -3' miRNA: 3'- aCGGCGUC-------------UAGCGUCUC---CACGCACgc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 192147 | 0.66 | 0.855437 |
Target: 5'- cUGCCgGCGcGGUCGCGGcGGaGCcUGCGg -3' miRNA: 3'- -ACGG-CGU-CUAGCGUCuCCaCGcACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 180912 | 0.66 | 0.862169 |
Target: 5'- gGCCGCGGucUCGCcggcgccgucGGAGGUcggucucGCGUccGCGg -3' miRNA: 3'- aCGGCGUCu-AGCG----------UCUCCA-------CGCA--CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 113884 | 0.66 | 0.862907 |
Target: 5'- gGCCGCGGcgCGCGucGGcGCGgucUGCa -3' miRNA: 3'- aCGGCGUCuaGCGUcuCCaCGC---ACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 152665 | 0.66 | 0.862907 |
Target: 5'- gUGCUcgaGCAGuAUCGCGagcuGGGG-GUGUGCGc -3' miRNA: 3'- -ACGG---CGUC-UAGCGU----CUCCaCGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 152805 | 0.66 | 0.862907 |
Target: 5'- cUGCUGCucccGAUCG---GGGUGCcGUGCGg -3' miRNA: 3'- -ACGGCGu---CUAGCgucUCCACG-CACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 55302 | 0.67 | 0.780397 |
Target: 5'- gGCgGCGGcGUCGCGGcGGGcGCGgGCGg -3' miRNA: 3'- aCGgCGUC-UAGCGUC-UCCaCGCaCGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 116360 | 0.67 | 0.780397 |
Target: 5'- gGCCGCGcGGUCcgacCGGucGGUgGCGUGCGg -3' miRNA: 3'- aCGGCGU-CUAGc---GUCu-CCA-CGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 77202 | 0.67 | 0.789342 |
Target: 5'- cGCCGCccGUCGC--AGGUGCGcuUGCa -3' miRNA: 3'- aCGGCGucUAGCGucUCCACGC--ACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 31806 | 0.67 | 0.789342 |
Target: 5'- aUGUacuucaGCAGAUCGCugaagucGAGGUcCGUGCa -3' miRNA: 3'- -ACGg-----CGUCUAGCGu------CUCCAcGCACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 34739 | 0.67 | 0.806823 |
Target: 5'- gGCCGCAGAgcgcgcgacggCGCGGuGGgacGCG-GCa -3' miRNA: 3'- aCGGCGUCUa----------GCGUCuCCa--CGCaCGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 91126 | 0.67 | 0.806823 |
Target: 5'- gUGCCGUgcguGGAggaggCGCGGAcGGUGC-UGCu -3' miRNA: 3'- -ACGGCG----UCUa----GCGUCU-CCACGcACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 94999 | 0.67 | 0.806823 |
Target: 5'- cGCCGCuugcuGUCGCugauGGGGcgGCuGUGCGg -3' miRNA: 3'- aCGGCGuc---UAGCGu---CUCCa-CG-CACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 71347 | 0.67 | 0.780397 |
Target: 5'- cGuCCGcCAGGcggCGCAGcAGGUGCG-GCa -3' miRNA: 3'- aC-GGC-GUCUa--GCGUC-UCCACGCaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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