Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 50456 | 1.09 | 0.002109 |
Target: 5'- gUGCCGCAGAUCGCAGAGGUGCGUGCGa -3' miRNA: 3'- -ACGGCGUCUAGCGUCUCCACGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 145484 | 0.76 | 0.317005 |
Target: 5'- gGCCGaGGAUCGC-GAGGaugagGCGUGCGa -3' miRNA: 3'- aCGGCgUCUAGCGuCUCCa----CGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 189163 | 0.74 | 0.400759 |
Target: 5'- cGCgGCAGGUCGUAGAcguagauGGccGCGUGCGc -3' miRNA: 3'- aCGgCGUCUAGCGUCU-------CCa-CGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 43375 | 0.73 | 0.46237 |
Target: 5'- gGCUGUAG-UCGCAGAGcacgGCGUGCu -3' miRNA: 3'- aCGGCGUCuAGCGUCUCca--CGCACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 157466 | 0.73 | 0.471445 |
Target: 5'- cGCCGUGGGUUuCGGGGGUGUGUGg- -3' miRNA: 3'- aCGGCGUCUAGcGUCUCCACGCACgc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 115995 | 0.73 | 0.48061 |
Target: 5'- cGCCGCGGAgacCGCGGAGaccGCGgugGCGa -3' miRNA: 3'- aCGGCGUCUa--GCGUCUCca-CGCa--CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 120064 | 0.71 | 0.586158 |
Target: 5'- gGCCGCGGAggccgaCGCGGcGGUgGCG-GCGa -3' miRNA: 3'- aCGGCGUCUa-----GCGUCuCCA-CGCaCGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 108607 | 0.7 | 0.604982 |
Target: 5'- gGCCGaccuGGUCGCGGuGGUGUGUcggaacuGCGg -3' miRNA: 3'- aCGGCgu--CUAGCGUCuCCACGCA-------CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 56083 | 0.7 | 0.615915 |
Target: 5'- gGCCaGCAGGccgCGCAGcacGUGCGUGCu -3' miRNA: 3'- aCGG-CGUCUa--GCGUCuc-CACGCACGc -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 99547 | 0.69 | 0.66267 |
Target: 5'- gGCCGCGGAaaccgcgcgCGCccuccgcgggcgagGGGGGUGCGgaggGCGc -3' miRNA: 3'- aCGGCGUCUa--------GCG--------------UCUCCACGCa---CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 126707 | 0.69 | 0.675545 |
Target: 5'- cGCCGCGGAcUCGgggcgagGGGGGUGgGUGgGg -3' miRNA: 3'- aCGGCGUCU-AGCg------UCUCCACgCACgC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 142332 | 0.69 | 0.675545 |
Target: 5'- gGCgGCGGAggcgGCGGAGGcgGCGgagGCGg -3' miRNA: 3'- aCGgCGUCUag--CGUCUCCa-CGCa--CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 115892 | 0.69 | 0.675545 |
Target: 5'- cGuCCGCGGAgCGCGGGGGguuCGUGgGg -3' miRNA: 3'- aC-GGCGUCUaGCGUCUCCac-GCACgC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 66847 | 0.69 | 0.705009 |
Target: 5'- cGCCGCcGucggCGCGgcGAGGccgcgGCGUGCGg -3' miRNA: 3'- aCGGCGuCua--GCGU--CUCCa----CGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 142368 | 0.68 | 0.752839 |
Target: 5'- gGCgGCGGAg-GCGGAGGgaGCG-GCGg -3' miRNA: 3'- aCGgCGUCUagCGUCUCCa-CGCaCGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 13075 | 0.68 | 0.759358 |
Target: 5'- gGCCGCGcGAccggCGCGaagucccgggggacGAGGUGCGUucgGCGg -3' miRNA: 3'- aCGGCGU-CUa---GCGU--------------CUCCACGCA---CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 133217 | 0.68 | 0.762137 |
Target: 5'- cGCCGcCGGAcauaUC-UGGGGuGUGCGUGCGa -3' miRNA: 3'- aCGGC-GUCU----AGcGUCUC-CACGCACGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 38466 | 0.68 | 0.762137 |
Target: 5'- gGCCGCGGcgCGCccuuuaugggcGGAGGaaGCGcgGCGg -3' miRNA: 3'- aCGGCGUCuaGCG-----------UCUCCa-CGCa-CGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 149237 | 0.68 | 0.771325 |
Target: 5'- cGCCGCc-GUCGCcGGGGUcGCG-GCGc -3' miRNA: 3'- aCGGCGucUAGCGuCUCCA-CGCaCGC- -5' |
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10844 | 3' | -58.5 | NC_002794.1 | + | 32564 | 0.67 | 0.779495 |
Target: 5'- aGCCGCGGAUagucgcgCGCGGcGGUGCcgggGCc -3' miRNA: 3'- aCGGCGUCUA-------GCGUCuCCACGca--CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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