miRNA: 3'- -ACGG---CGUC-UAGCGU----CUCCaCGCACGC- -5'
miRNA: 3'- -ACGGCGu---CUAGCgucUCCACG-CACGC- -5'
miRNA: 3'- aCGGC--GUCUAGCGu------CUCCaCGCACgc -5'
Results 41 - 43 of 43 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10844 | 3' | -58.5 | NC_002794.1 | + | 152665 | 0.66 | 0.862907 |
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Target: 5'- gUGCUcgaGCAGuAUCGCGagcuGGGG-GUGUGCGc -3' miRNA: 3'- -ACGG---CGUC-UAGCGU----CUCCaCGCACGC- -5' |
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| 10844 | 3' | -58.5 | NC_002794.1 | + | 152805 | 0.66 | 0.862907 |
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Target: 5'- cUGCUGCucccGAUCG---GGGUGCcGUGCGg -3' miRNA: 3'- -ACGGCGu---CUAGCgucUCCACG-CACGC- -5' |
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| 10844 | 3' | -58.5 | NC_002794.1 | + | 175707 | 0.66 | 0.862907 |
|
Target: 5'- cGCCGguCAGAUCGCcacaggcGAGGaGCGUGg- -3' miRNA: 3'- aCGGC--GUCUAGCGu------CUCCaCGCACgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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