miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10844 3' -58.5 NC_002794.1 + 71347 0.67 0.780397
Target:  5'- cGuCCGcCAGGcggCGCAGcAGGUGCG-GCa -3'
miRNA:   3'- aC-GGC-GUCUa--GCGUC-UCCACGCaCGc -5'
10844 3' -58.5 NC_002794.1 + 55302 0.67 0.780397
Target:  5'- gGCgGCGGcGUCGCGGcGGGcGCGgGCGg -3'
miRNA:   3'- aCGgCGUC-UAGCGUC-UCCaCGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 116360 0.67 0.780397
Target:  5'- gGCCGCGcGGUCcgacCGGucGGUgGCGUGCGg -3'
miRNA:   3'- aCGGCGU-CUAGc---GUCu-CCA-CGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 32564 0.67 0.779495
Target:  5'- aGCCGCGGAUagucgcgCGCGGcGGUGCcgggGCc -3'
miRNA:   3'- aCGGCGUCUA-------GCGUCuCCACGca--CGc -5'
10844 3' -58.5 NC_002794.1 + 149237 0.68 0.771325
Target:  5'- cGCCGCc-GUCGCcGGGGUcGCG-GCGc -3'
miRNA:   3'- aCGGCGucUAGCGuCUCCA-CGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 133217 0.68 0.762137
Target:  5'- cGCCGcCGGAcauaUC-UGGGGuGUGCGUGCGa -3'
miRNA:   3'- aCGGC-GUCU----AGcGUCUC-CACGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 38466 0.68 0.762137
Target:  5'- gGCCGCGGcgCGCccuuuaugggcGGAGGaaGCGcgGCGg -3'
miRNA:   3'- aCGGCGUCuaGCG-----------UCUCCa-CGCa-CGC- -5'
10844 3' -58.5 NC_002794.1 + 13075 0.68 0.759358
Target:  5'- gGCCGCGcGAccggCGCGaagucccgggggacGAGGUGCGUucgGCGg -3'
miRNA:   3'- aCGGCGU-CUa---GCGU--------------CUCCACGCA---CGC- -5'
10844 3' -58.5 NC_002794.1 + 142368 0.68 0.752839
Target:  5'- gGCgGCGGAg-GCGGAGGgaGCG-GCGg -3'
miRNA:   3'- aCGgCGUCUagCGUCUCCa-CGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 66847 0.69 0.705009
Target:  5'- cGCCGCcGucggCGCGgcGAGGccgcgGCGUGCGg -3'
miRNA:   3'- aCGGCGuCua--GCGU--CUCCa----CGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 126707 0.69 0.675545
Target:  5'- cGCCGCGGAcUCGgggcgagGGGGGUGgGUGgGg -3'
miRNA:   3'- aCGGCGUCU-AGCg------UCUCCACgCACgC- -5'
10844 3' -58.5 NC_002794.1 + 142332 0.69 0.675545
Target:  5'- gGCgGCGGAggcgGCGGAGGcgGCGgagGCGg -3'
miRNA:   3'- aCGgCGUCUag--CGUCUCCa-CGCa--CGC- -5'
10844 3' -58.5 NC_002794.1 + 115892 0.69 0.675545
Target:  5'- cGuCCGCGGAgCGCGGGGGguuCGUGgGg -3'
miRNA:   3'- aC-GGCGUCUaGCGUCUCCac-GCACgC- -5'
10844 3' -58.5 NC_002794.1 + 99547 0.69 0.66267
Target:  5'- gGCCGCGGAaaccgcgcgCGCccuccgcgggcgagGGGGGUGCGgaggGCGc -3'
miRNA:   3'- aCGGCGUCUa--------GCG--------------UCUCCACGCa---CGC- -5'
10844 3' -58.5 NC_002794.1 + 56083 0.7 0.615915
Target:  5'- gGCCaGCAGGccgCGCAGcacGUGCGUGCu -3'
miRNA:   3'- aCGG-CGUCUa--GCGUCuc-CACGCACGc -5'
10844 3' -58.5 NC_002794.1 + 108607 0.7 0.604982
Target:  5'- gGCCGaccuGGUCGCGGuGGUGUGUcggaacuGCGg -3'
miRNA:   3'- aCGGCgu--CUAGCGUCuCCACGCA-------CGC- -5'
10844 3' -58.5 NC_002794.1 + 120064 0.71 0.586158
Target:  5'- gGCCGCGGAggccgaCGCGGcGGUgGCG-GCGa -3'
miRNA:   3'- aCGGCGUCUa-----GCGUCuCCA-CGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 115995 0.73 0.48061
Target:  5'- cGCCGCGGAgacCGCGGAGaccGCGgugGCGa -3'
miRNA:   3'- aCGGCGUCUa--GCGUCUCca-CGCa--CGC- -5'
10844 3' -58.5 NC_002794.1 + 157466 0.73 0.471445
Target:  5'- cGCCGUGGGUUuCGGGGGUGUGUGg- -3'
miRNA:   3'- aCGGCGUCUAGcGUCUCCACGCACgc -5'
10844 3' -58.5 NC_002794.1 + 43375 0.73 0.46237
Target:  5'- gGCUGUAG-UCGCAGAGcacgGCGUGCu -3'
miRNA:   3'- aCGGCGUCuAGCGUCUCca--CGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.