miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10844 3' -58.5 NC_002794.1 + 13075 0.68 0.759358
Target:  5'- gGCCGCGcGAccggCGCGaagucccgggggacGAGGUGCGUucgGCGg -3'
miRNA:   3'- aCGGCGU-CUa---GCGU--------------CUCCACGCA---CGC- -5'
10844 3' -58.5 NC_002794.1 + 31806 0.67 0.789342
Target:  5'- aUGUacuucaGCAGAUCGCugaagucGAGGUcCGUGCa -3'
miRNA:   3'- -ACGg-----CGUCUAGCGu------CUCCAcGCACGc -5'
10844 3' -58.5 NC_002794.1 + 32564 0.67 0.779495
Target:  5'- aGCCGCGGAUagucgcgCGCGGcGGUGCcgggGCc -3'
miRNA:   3'- aCGGCGUCUA-------GCGUCuCCACGca--CGc -5'
10844 3' -58.5 NC_002794.1 + 34739 0.67 0.806823
Target:  5'- gGCCGCAGAgcgcgcgacggCGCGGuGGgacGCG-GCa -3'
miRNA:   3'- aCGGCGUCUa----------GCGUCuCCa--CGCaCGc -5'
10844 3' -58.5 NC_002794.1 + 38466 0.68 0.762137
Target:  5'- gGCCGCGGcgCGCccuuuaugggcGGAGGaaGCGcgGCGg -3'
miRNA:   3'- aCGGCGUCuaGCG-----------UCUCCa-CGCa-CGC- -5'
10844 3' -58.5 NC_002794.1 + 43375 0.73 0.46237
Target:  5'- gGCUGUAG-UCGCAGAGcacgGCGUGCu -3'
miRNA:   3'- aCGGCGUCuAGCGUCUCca--CGCACGc -5'
10844 3' -58.5 NC_002794.1 + 50456 1.09 0.002109
Target:  5'- gUGCCGCAGAUCGCAGAGGUGCGUGCGa -3'
miRNA:   3'- -ACGGCGUCUAGCGUCUCCACGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 55302 0.67 0.780397
Target:  5'- gGCgGCGGcGUCGCGGcGGGcGCGgGCGg -3'
miRNA:   3'- aCGgCGUC-UAGCGUC-UCCaCGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 56083 0.7 0.615915
Target:  5'- gGCCaGCAGGccgCGCAGcacGUGCGUGCu -3'
miRNA:   3'- aCGG-CGUCUa--GCGUCuc-CACGCACGc -5'
10844 3' -58.5 NC_002794.1 + 66847 0.69 0.705009
Target:  5'- cGCCGCcGucggCGCGgcGAGGccgcgGCGUGCGg -3'
miRNA:   3'- aCGGCGuCua--GCGU--CUCCa----CGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 71347 0.67 0.780397
Target:  5'- cGuCCGcCAGGcggCGCAGcAGGUGCG-GCa -3'
miRNA:   3'- aC-GGC-GUCUa--GCGUC-UCCACGCaCGc -5'
10844 3' -58.5 NC_002794.1 + 77202 0.67 0.789342
Target:  5'- cGCCGCccGUCGC--AGGUGCGcuUGCa -3'
miRNA:   3'- aCGGCGucUAGCGucUCCACGC--ACGc -5'
10844 3' -58.5 NC_002794.1 + 91126 0.67 0.806823
Target:  5'- gUGCCGUgcguGGAggaggCGCGGAcGGUGC-UGCu -3'
miRNA:   3'- -ACGGCG----UCUa----GCGUCU-CCACGcACGc -5'
10844 3' -58.5 NC_002794.1 + 94048 0.66 0.839928
Target:  5'- aGCgGCGGcggUGCGGGGGcgGCGggggGCGa -3'
miRNA:   3'- aCGgCGUCua-GCGUCUCCa-CGCa---CGC- -5'
10844 3' -58.5 NC_002794.1 + 94501 0.66 0.854679
Target:  5'- gGCCGUGGcggggaugaauacGUUGCAGAGacuGUGCGUGg- -3'
miRNA:   3'- aCGGCGUC-------------UAGCGUCUC---CACGCACgc -5'
10844 3' -58.5 NC_002794.1 + 94999 0.67 0.806823
Target:  5'- cGCCGCuugcuGUCGCugauGGGGcgGCuGUGCGg -3'
miRNA:   3'- aCGGCGuc---UAGCGu---CUCCa-CG-CACGC- -5'
10844 3' -58.5 NC_002794.1 + 99547 0.69 0.66267
Target:  5'- gGCCGCGGAaaccgcgcgCGCccuccgcgggcgagGGGGGUGCGgaggGCGc -3'
miRNA:   3'- aCGGCGUCUa--------GCG--------------UCUCCACGCa---CGC- -5'
10844 3' -58.5 NC_002794.1 + 107221 0.66 0.839928
Target:  5'- cGCCggGCGGcgCGCGacGGGGgcgGCGUcGCGg -3'
miRNA:   3'- aCGG--CGUCuaGCGU--CUCCa--CGCA-CGC- -5'
10844 3' -58.5 NC_002794.1 + 107872 0.67 0.780397
Target:  5'- cUGCauCGCGGAggcggCGCGGcGGGUGCG-GCu -3'
miRNA:   3'- -ACG--GCGUCUa----GCGUC-UCCACGCaCGc -5'
10844 3' -58.5 NC_002794.1 + 108607 0.7 0.604982
Target:  5'- gGCCGaccuGGUCGCGGuGGUGUGUcggaacuGCGg -3'
miRNA:   3'- aCGGCgu--CUAGCGUCuCCACGCA-------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.