miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10844 3' -58.5 NC_002794.1 + 113884 0.66 0.862907
Target:  5'- gGCCGCGGcgCGCGucGGcGCGgucUGCa -3'
miRNA:   3'- aCGGCGUCuaGCGUcuCCaCGC---ACGc -5'
10844 3' -58.5 NC_002794.1 + 115892 0.69 0.675545
Target:  5'- cGuCCGCGGAgCGCGGGGGguuCGUGgGg -3'
miRNA:   3'- aC-GGCGUCUaGCGUCUCCac-GCACgC- -5'
10844 3' -58.5 NC_002794.1 + 115948 0.67 0.823705
Target:  5'- cGCCGCGuGUCGCcGGGGacCGUGgGg -3'
miRNA:   3'- aCGGCGUcUAGCGuCUCCacGCACgC- -5'
10844 3' -58.5 NC_002794.1 + 115995 0.73 0.48061
Target:  5'- cGCCGCGGAgacCGCGGAGaccGCGgugGCGa -3'
miRNA:   3'- aCGGCGUCUa--GCGUCUCca-CGCa--CGC- -5'
10844 3' -58.5 NC_002794.1 + 116360 0.67 0.780397
Target:  5'- gGCCGCGcGGUCcgacCGGucGGUgGCGUGCGg -3'
miRNA:   3'- aCGGCGU-CUAGc---GUCu-CCA-CGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 120064 0.71 0.586158
Target:  5'- gGCCGCGGAggccgaCGCGGcGGUgGCG-GCGa -3'
miRNA:   3'- aCGGCGUCUa-----GCGUCuCCA-CGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 126707 0.69 0.675545
Target:  5'- cGCCGCGGAcUCGgggcgagGGGGGUGgGUGgGg -3'
miRNA:   3'- aCGGCGUCU-AGCg------UCUCCACgCACgC- -5'
10844 3' -58.5 NC_002794.1 + 133217 0.68 0.762137
Target:  5'- cGCCGcCGGAcauaUC-UGGGGuGUGCGUGCGa -3'
miRNA:   3'- aCGGC-GUCU----AGcGUCUC-CACGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 142332 0.69 0.675545
Target:  5'- gGCgGCGGAggcgGCGGAGGcgGCGgagGCGg -3'
miRNA:   3'- aCGgCGUCUag--CGUCUCCa-CGCa--CGC- -5'
10844 3' -58.5 NC_002794.1 + 142368 0.68 0.752839
Target:  5'- gGCgGCGGAg-GCGGAGGgaGCG-GCGg -3'
miRNA:   3'- aCGgCGUCUagCGUCUCCa-CGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 143077 0.66 0.847775
Target:  5'- gGCgGCAGA-CGUaguGGAGGuUGCGcgGCGu -3'
miRNA:   3'- aCGgCGUCUaGCG---UCUCC-ACGCa-CGC- -5'
10844 3' -58.5 NC_002794.1 + 145484 0.76 0.317005
Target:  5'- gGCCGaGGAUCGC-GAGGaugagGCGUGCGa -3'
miRNA:   3'- aCGGCgUCUAGCGuCUCCa----CGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 149237 0.68 0.771325
Target:  5'- cGCCGCc-GUCGCcGGGGUcGCG-GCGc -3'
miRNA:   3'- aCGGCGucUAGCGuCUCCA-CGCaCGC- -5'
10844 3' -58.5 NC_002794.1 + 149346 0.66 0.831903
Target:  5'- gGCCG-GGGUCGCGG-GG-GCGUGg- -3'
miRNA:   3'- aCGGCgUCUAGCGUCuCCaCGCACgc -5'
10844 3' -58.5 NC_002794.1 + 152665 0.66 0.862907
Target:  5'- gUGCUcgaGCAGuAUCGCGagcuGGGG-GUGUGCGc -3'
miRNA:   3'- -ACGG---CGUC-UAGCGU----CUCCaCGCACGC- -5'
10844 3' -58.5 NC_002794.1 + 152805 0.66 0.862907
Target:  5'- cUGCUGCucccGAUCG---GGGUGCcGUGCGg -3'
miRNA:   3'- -ACGGCGu---CUAGCgucUCCACG-CACGC- -5'
10844 3' -58.5 NC_002794.1 + 157466 0.73 0.471445
Target:  5'- cGCCGUGGGUUuCGGGGGUGUGUGg- -3'
miRNA:   3'- aCGGCGUCUAGcGUCUCCACGCACgc -5'
10844 3' -58.5 NC_002794.1 + 175707 0.66 0.862907
Target:  5'- cGCCGguCAGAUCGCcacaggcGAGGaGCGUGg- -3'
miRNA:   3'- aCGGC--GUCUAGCGu------CUCCaCGCACgc -5'
10844 3' -58.5 NC_002794.1 + 180912 0.66 0.862169
Target:  5'- gGCCGCGGucUCGCcggcgccgucGGAGGUcggucucGCGUccGCGg -3'
miRNA:   3'- aCGGCGUCu-AGCG----------UCUCCA-------CGCA--CGC- -5'
10844 3' -58.5 NC_002794.1 + 189163 0.74 0.400759
Target:  5'- cGCgGCAGGUCGUAGAcguagauGGccGCGUGCGc -3'
miRNA:   3'- aCGgCGUCUAGCGUCU-------CCa-CGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.