Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 192147 | 0.66 | 0.855437 |
Target: 5'- cUGCCgGCGcGGUCGCGGcGGaGCcUGCGg -3' miRNA: 3'- -ACGG-CGU-CUAGCGUCuCCaCGcACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 190621 | 0.66 | 0.847775 |
Target: 5'- aGCCGCAGGUucgacucgcCGUAGcccGGcGUGUGCa -3' miRNA: 3'- aCGGCGUCUA---------GCGUCu--CCaCGCACGc -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 189284 | 0.67 | 0.780397 |
Target: 5'- aGCacaGgAGGUCGCccaGGAGGUGguCGUGCa -3' miRNA: 3'- aCGg--CgUCUAGCG---UCUCCAC--GCACGc -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 189163 | 0.74 | 0.400759 |
Target: 5'- cGCgGCAGGUCGUAGAcguagauGGccGCGUGCGc -3' miRNA: 3'- aCGgCGUCUAGCGUCU-------CCa-CGCACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 180912 | 0.66 | 0.862169 |
Target: 5'- gGCCGCGGucUCGCcggcgccgucGGAGGUcggucucGCGUccGCGg -3' miRNA: 3'- aCGGCGUCu-AGCG----------UCUCCA-------CGCA--CGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 175707 | 0.66 | 0.862907 |
Target: 5'- cGCCGguCAGAUCGCcacaggcGAGGaGCGUGg- -3' miRNA: 3'- aCGGC--GUCUAGCGu------CUCCaCGCACgc -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 157466 | 0.73 | 0.471445 |
Target: 5'- cGCCGUGGGUUuCGGGGGUGUGUGg- -3' miRNA: 3'- aCGGCGUCUAGcGUCUCCACGCACgc -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 152805 | 0.66 | 0.862907 |
Target: 5'- cUGCUGCucccGAUCG---GGGUGCcGUGCGg -3' miRNA: 3'- -ACGGCGu---CUAGCgucUCCACG-CACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 152665 | 0.66 | 0.862907 |
Target: 5'- gUGCUcgaGCAGuAUCGCGagcuGGGG-GUGUGCGc -3' miRNA: 3'- -ACGG---CGUC-UAGCGU----CUCCaCGCACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 149346 | 0.66 | 0.831903 |
Target: 5'- gGCCG-GGGUCGCGG-GG-GCGUGg- -3' miRNA: 3'- aCGGCgUCUAGCGUCuCCaCGCACgc -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 149237 | 0.68 | 0.771325 |
Target: 5'- cGCCGCc-GUCGCcGGGGUcGCG-GCGc -3' miRNA: 3'- aCGGCGucUAGCGuCUCCA-CGCaCGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 145484 | 0.76 | 0.317005 |
Target: 5'- gGCCGaGGAUCGC-GAGGaugagGCGUGCGa -3' miRNA: 3'- aCGGCgUCUAGCGuCUCCa----CGCACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 143077 | 0.66 | 0.847775 |
Target: 5'- gGCgGCAGA-CGUaguGGAGGuUGCGcgGCGu -3' miRNA: 3'- aCGgCGUCUaGCG---UCUCC-ACGCa-CGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 142368 | 0.68 | 0.752839 |
Target: 5'- gGCgGCGGAg-GCGGAGGgaGCG-GCGg -3' miRNA: 3'- aCGgCGUCUagCGUCUCCa-CGCaCGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 142332 | 0.69 | 0.675545 |
Target: 5'- gGCgGCGGAggcgGCGGAGGcgGCGgagGCGg -3' miRNA: 3'- aCGgCGUCUag--CGUCUCCa-CGCa--CGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 133217 | 0.68 | 0.762137 |
Target: 5'- cGCCGcCGGAcauaUC-UGGGGuGUGCGUGCGa -3' miRNA: 3'- aCGGC-GUCU----AGcGUCUC-CACGCACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 126707 | 0.69 | 0.675545 |
Target: 5'- cGCCGCGGAcUCGgggcgagGGGGGUGgGUGgGg -3' miRNA: 3'- aCGGCGUCU-AGCg------UCUCCACgCACgC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 120064 | 0.71 | 0.586158 |
Target: 5'- gGCCGCGGAggccgaCGCGGcGGUgGCG-GCGa -3' miRNA: 3'- aCGGCGUCUa-----GCGUCuCCA-CGCaCGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 116360 | 0.67 | 0.780397 |
Target: 5'- gGCCGCGcGGUCcgacCGGucGGUgGCGUGCGg -3' miRNA: 3'- aCGGCGU-CUAGc---GUCu-CCA-CGCACGC- -5' |
|||||||
10844 | 3' | -58.5 | NC_002794.1 | + | 115995 | 0.73 | 0.48061 |
Target: 5'- cGCCGCGGAgacCGCGGAGaccGCGgugGCGa -3' miRNA: 3'- aCGGCGUCUa--GCGUCUCca-CGCa--CGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home