miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 3' -64.8 NC_002794.1 + 44453 0.66 0.639629
Target:  5'- cCCGCccGGAcGUCGG-CGGCGGaGACCGc- -3'
miRNA:   3'- -GGCG--CCU-CGGCCgGCCGUC-CUGGCuc -5'
10845 3' -64.8 NC_002794.1 + 82443 0.66 0.639629
Target:  5'- cUCGCGGcucGGCaCGGUCGGCccGACCu-- -3'
miRNA:   3'- -GGCGCC---UCG-GCCGGCCGucCUGGcuc -5'
10845 3' -64.8 NC_002794.1 + 119698 0.66 0.639629
Target:  5'- gCUGCuGGGCCGGCggccacaacggCGGCuucGGcACCGGGc -3'
miRNA:   3'- -GGCGcCUCGGCCG-----------GCCGu--CC-UGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 143276 0.66 0.639629
Target:  5'- gCC-CGGcGCCGGCCGcuCGGGGUCGGGc -3'
miRNA:   3'- -GGcGCCuCGGCCGGCc-GUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 42582 0.66 0.639629
Target:  5'- cCCGCGGAcggaggaggGCgCGG-CGGcCGGGAgCGGGc -3'
miRNA:   3'- -GGCGCCU---------CG-GCCgGCC-GUCCUgGCUC- -5'
10845 3' -64.8 NC_002794.1 + 104880 0.66 0.63024
Target:  5'- gCGCGuGaAGCgGGCCGGCcgcgAGGcGCCGuGc -3'
miRNA:   3'- gGCGC-C-UCGgCCGGCCG----UCC-UGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 117215 0.66 0.63024
Target:  5'- -gGCGGcuCCGGCCGcGuCAGGgcgACCGAc -3'
miRNA:   3'- ggCGCCucGGCCGGC-C-GUCC---UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 83418 0.66 0.63024
Target:  5'- uUC-CGGAuGCUGGCCGGCAa-GCCGGu -3'
miRNA:   3'- -GGcGCCU-CGGCCGGCCGUccUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 44198 0.66 0.63024
Target:  5'- -gGCGaAGCCGGgccgacguCCGGCucGGGcGCCGAGg -3'
miRNA:   3'- ggCGCcUCGGCC--------GGCCG--UCC-UGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 142914 0.66 0.624606
Target:  5'- uCCG-GGGGCCGGa--GCAGGauguagaagcaggugGCCGAGg -3'
miRNA:   3'- -GGCgCCUCGGCCggcCGUCC---------------UGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 179990 0.66 0.620851
Target:  5'- -gGCGGuGGCCGcGaCGGCGGGcCCGGc -3'
miRNA:   3'- ggCGCC-UCGGC-CgGCCGUCCuGGCUc -5'
10845 3' -64.8 NC_002794.1 + 18532 0.66 0.620851
Target:  5'- gCCGCGaacgcGAGCaCGaGCaCGGCGGcGACCGcGa -3'
miRNA:   3'- -GGCGC-----CUCG-GC-CG-GCCGUC-CUGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 142150 0.66 0.620851
Target:  5'- aCgGCGGAGgCGG-CGGUAGcACCGGc -3'
miRNA:   3'- -GgCGCCUCgGCCgGCCGUCcUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 121800 0.66 0.620851
Target:  5'- aCCGCGa--CCGGCCGGCgccugccgcugcAGGAUCGc- -3'
miRNA:   3'- -GGCGCcucGGCCGGCCG------------UCCUGGCuc -5'
10845 3' -64.8 NC_002794.1 + 45442 0.66 0.620851
Target:  5'- cUCGCGGAcCCGGUCGcGCGucagcGGGCCcAGg -3'
miRNA:   3'- -GGCGCCUcGGCCGGC-CGU-----CCUGGcUC- -5'
10845 3' -64.8 NC_002794.1 + 71401 0.66 0.619913
Target:  5'- uCUGCGGcucgGGCCGGCCGucguccaGCGuGGACuCGuAGg -3'
miRNA:   3'- -GGCGCC----UCGGCCGGC-------CGU-CCUG-GC-UC- -5'
10845 3' -64.8 NC_002794.1 + 45663 0.66 0.61147
Target:  5'- uCCGCGG-GCCGcagaagagcaGCCaGaGCAGGGCCu-- -3'
miRNA:   3'- -GGCGCCuCGGC----------CGG-C-CGUCCUGGcuc -5'
10845 3' -64.8 NC_002794.1 + 14775 0.66 0.61147
Target:  5'- gCCGCuGAgGCCggcgaGGCCGGCGuGACCGcGa -3'
miRNA:   3'- -GGCGcCU-CGG-----CCGGCCGUcCUGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 188786 0.66 0.602102
Target:  5'- -aGCGGuAG-CGGCCGGCcccGCCGAGc -3'
miRNA:   3'- ggCGCC-UCgGCCGGCCGuccUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 107180 0.66 0.602102
Target:  5'- gCgGCGGAGCCGgcgccgccgccGCCGGCcucgcccGGcgccGCCGGGc -3'
miRNA:   3'- -GgCGCCUCGGC-----------CGGCCGu------CC----UGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.