miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 3' -64.8 NC_002794.1 + 50367 1.09 0.000783
Target:  5'- aCCGCGGAGCCGGCCGGCAGGACCGAGu -3'
miRNA:   3'- -GGCGCCUCGGCCGGCCGUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 107876 0.81 0.074564
Target:  5'- aUCGCGGAGgCGGCgCGGCGGGugCGGc -3'
miRNA:   3'- -GGCGCCUCgGCCG-GCCGUCCugGCUc -5'
10845 3' -64.8 NC_002794.1 + 108450 0.81 0.076416
Target:  5'- cUCGCGGcggcGGCCcGCCGGCAcGGGCCGAGg -3'
miRNA:   3'- -GGCGCC----UCGGcCGGCCGU-CCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 51212 0.8 0.095183
Target:  5'- cCCGCGGAG-CGGCCGGCcGG-CCGAu -3'
miRNA:   3'- -GGCGCCUCgGCCGGCCGuCCuGGCUc -5'
10845 3' -64.8 NC_002794.1 + 188353 0.78 0.127044
Target:  5'- gUCGCGcccGuCCGGCCGGCGGcGGCCGAGg -3'
miRNA:   3'- -GGCGCcu-C-GGCCGGCCGUC-CUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 183150 0.77 0.133234
Target:  5'- uCCGCGGAcacgcgGCCGggcugcccgaGCCGGUcgGGGACCGAGa -3'
miRNA:   3'- -GGCGCCU------CGGC----------CGGCCG--UCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 76950 0.77 0.139371
Target:  5'- aCCGCGGAGacgccguCCGGCCGGCcc-GCCGAGc -3'
miRNA:   3'- -GGCGCCUC-------GGCCGGCCGuccUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 32303 0.77 0.139701
Target:  5'- gCCGCGGcGGCCGcGCCGGCcGcGGCCGGa -3'
miRNA:   3'- -GGCGCC-UCGGC-CGGCCGuC-CUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 112246 0.77 0.153504
Target:  5'- gCCGCGaacGCC-GCCGGCGGGACCGGc -3'
miRNA:   3'- -GGCGCcu-CGGcCGGCCGUCCUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 119518 0.76 0.168533
Target:  5'- gCGCGGAGCCGGCCG-C-GGACCc-- -3'
miRNA:   3'- gGCGCCUCGGCCGGCcGuCCUGGcuc -5'
10845 3' -64.8 NC_002794.1 + 93995 0.76 0.168533
Target:  5'- gCGCGGAcGCCGgcGCCGGCGgcGGGCCGGc -3'
miRNA:   3'- gGCGCCU-CGGC--CGGCCGU--CCUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 32582 0.76 0.168533
Target:  5'- gCgGCGGuGCCggGGCCGGggcCGGGGCCGGGg -3'
miRNA:   3'- -GgCGCCuCGG--CCGGCC---GUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 87037 0.76 0.168533
Target:  5'- uCCGgGGA-CCGGCgCGGCucGGGGCCGGGu -3'
miRNA:   3'- -GGCgCCUcGGCCG-GCCG--UCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 156410 0.76 0.170106
Target:  5'- gCCGCGGccgcGGCCacGGCCGGCGGGugagagaccggucgcGCCGAa -3'
miRNA:   3'- -GGCGCC----UCGG--CCGGCCGUCC---------------UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 112327 0.76 0.176532
Target:  5'- aCgGCGGGgagcgcGCCGGCCGGCGGcGCCGGc -3'
miRNA:   3'- -GgCGCCU------CGGCCGGCCGUCcUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 71229 0.76 0.176532
Target:  5'- gCCGCGuAGUggCGGCCGGCGuGGACCGGc -3'
miRNA:   3'- -GGCGCcUCG--GCCGGCCGU-CCUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 110626 0.75 0.184867
Target:  5'- gCCGCGGcGCCGcGgCGGCGGGGUCGGGu -3'
miRNA:   3'- -GGCGCCuCGGC-CgGCCGUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 95759 0.75 0.198019
Target:  5'- cUCGCGGGGCggCGGCCGcGaCGGcGGCCGGGg -3'
miRNA:   3'- -GGCGCCUCG--GCCGGC-C-GUC-CUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 50585 0.75 0.202581
Target:  5'- gCGCGGcggcuggguGGCCGgcGCCGGgGGGAUCGAGa -3'
miRNA:   3'- gGCGCC---------UCGGC--CGGCCgUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 111599 0.75 0.202581
Target:  5'- -aGCGGGGUgaucucccaGGCCGGCGGGGCCGc- -3'
miRNA:   3'- ggCGCCUCGg--------CCGGCCGUCCUGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.