miRNA display CGI


Results 21 - 40 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 3' -64.8 NC_002794.1 + 143712 0.66 0.599295
Target:  5'- aCCGCGG-GCC--CCGGCGGGcgucguccucgcccGCCGGa -3'
miRNA:   3'- -GGCGCCuCGGccGGCCGUCC--------------UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 128415 0.66 0.592753
Target:  5'- aCCGgGGAGaCCGGgaugaCCGGguGGcCCGc- -3'
miRNA:   3'- -GGCgCCUC-GGCC-----GGCCguCCuGGCuc -5'
10845 3' -64.8 NC_002794.1 + 130196 0.66 0.592753
Target:  5'- uCCGaccuccGAGuuGGCCGuGCAGGcgACCGAc -3'
miRNA:   3'- -GGCgc----CUCggCCGGC-CGUCC--UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 188249 0.66 0.592753
Target:  5'- aCCgGCGGcGgCGGCgguagCGGCGGG-CCGGGu -3'
miRNA:   3'- -GG-CGCCuCgGCCG-----GCCGUCCuGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 128278 0.66 0.592753
Target:  5'- gCGCGGAGCCgacGGCCGucuuCGacACCGAGa -3'
miRNA:   3'- gGCGCCUCGG---CCGGCc---GUccUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 140017 0.66 0.592753
Target:  5'- gCCGCGGAgGCCgcGGCCcccGCGGGcGgCGGGa -3'
miRNA:   3'- -GGCGCCU-CGG--CCGGc--CGUCC-UgGCUC- -5'
10845 3' -64.8 NC_002794.1 + 107537 0.66 0.592753
Target:  5'- gCGCGGcGCCGG-CGGCGacGACCGcGg -3'
miRNA:   3'- gGCGCCuCGGCCgGCCGUc-CUGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 66023 0.66 0.592753
Target:  5'- gCCGCGGucgucGCCgucgucgucgGGCCGGCAGcGGCgGc- -3'
miRNA:   3'- -GGCGCCu----CGG----------CCGGCCGUC-CUGgCuc -5'
10845 3' -64.8 NC_002794.1 + 89975 0.66 0.590885
Target:  5'- aCCGUGGugcGCCGGCguucgacCGGUgcgcacgaucuucGGGACgGAGa -3'
miRNA:   3'- -GGCGCCu--CGGCCG-------GCCG-------------UCCUGgCUC- -5'
10845 3' -64.8 NC_002794.1 + 99777 0.66 0.589952
Target:  5'- cCCGCGGuGCCGGCgucgacuacgagcgCGcgccGCGGGcGCCGGc -3'
miRNA:   3'- -GGCGCCuCGGCCG--------------GC----CGUCC-UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 106391 0.66 0.583427
Target:  5'- aCgGCGGgcgaacGGUCGGaccCCGGCGGcGCCGGGg -3'
miRNA:   3'- -GgCGCC------UCGGCC---GGCCGUCcUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 45587 0.66 0.583427
Target:  5'- -gGCGGcAGCagGGCCGGgaaCGGGACCcGGa -3'
miRNA:   3'- ggCGCC-UCGg-CCGGCC---GUCCUGGcUC- -5'
10845 3' -64.8 NC_002794.1 + 120137 0.66 0.583427
Target:  5'- aCCGgGGA-CgGGCCGGUgccggacgacgAGGACCucGAGa -3'
miRNA:   3'- -GGCgCCUcGgCCGGCCG-----------UCCUGG--CUC- -5'
10845 3' -64.8 NC_002794.1 + 72927 0.66 0.583427
Target:  5'- gCCGuCGGAGCCGGCgucCGcGCGcccACCGGGc -3'
miRNA:   3'- -GGC-GCCUCGGCCG---GC-CGUcc-UGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 64813 0.66 0.583427
Target:  5'- gCCGCGGAcggcGgCGaGCCGGCGccgacGACCGGa -3'
miRNA:   3'- -GGCGCCU----CgGC-CGGCCGUc----CUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 17434 0.66 0.583427
Target:  5'- uCCGCGccGCCGGCgcucgGGCccgcGACCGAGg -3'
miRNA:   3'- -GGCGCcuCGGCCGg----CCGuc--CUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 132907 0.66 0.583427
Target:  5'- cCUGCGGcGGCCGGucacucguucCCGGUuGGACgCGAc -3'
miRNA:   3'- -GGCGCC-UCGGCC----------GGCCGuCCUG-GCUc -5'
10845 3' -64.8 NC_002794.1 + 60633 0.67 0.574132
Target:  5'- -gGCGGAcCCGgcGCCGGCGGcGCCGGc -3'
miRNA:   3'- ggCGCCUcGGC--CGGCCGUCcUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 151642 0.67 0.574132
Target:  5'- cUCGCc--GCCGGCCGGCAcuuGGcucgccGCCGGGu -3'
miRNA:   3'- -GGCGccuCGGCCGGCCGU---CC------UGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 34270 0.67 0.574132
Target:  5'- aCCGCGcGcAGgCGGCCaGCgccAGcGACCGGGa -3'
miRNA:   3'- -GGCGC-C-UCgGCCGGcCG---UC-CUGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.