miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 3' -64.8 NC_002794.1 + 871 0.72 0.294236
Target:  5'- cCCGC-GAGgCGGUCGGCGugcgcgcGGGCCGGGu -3'
miRNA:   3'- -GGCGcCUCgGCCGGCCGU-------CCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 6841 0.68 0.510296
Target:  5'- aCCcCGG-GCCGGCCGGagaggAGGACUccaGGGa -3'
miRNA:   3'- -GGcGCCuCGGCCGGCCg----UCCUGG---CUC- -5'
10845 3' -64.8 NC_002794.1 + 13804 0.69 0.449614
Target:  5'- uUCGCGacGGGcCCGGCCGGCGGcGACgGc- -3'
miRNA:   3'- -GGCGC--CUC-GGCCGGCCGUC-CUGgCuc -5'
10845 3' -64.8 NC_002794.1 + 14563 0.69 0.416772
Target:  5'- gCGCGGgaggcgAGCCGGCCGaccgaaGCGGG-CCGuGg -3'
miRNA:   3'- gGCGCC------UCGGCCGGC------CGUCCuGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 14615 0.7 0.400909
Target:  5'- aCCGCgacGGGGCCGGa-GaCGGGGCCGGGc -3'
miRNA:   3'- -GGCG---CCUCGGCCggCcGUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 14775 0.66 0.61147
Target:  5'- gCCGCuGAgGCCggcgaGGCCGGCGuGACCGcGa -3'
miRNA:   3'- -GGCGcCU-CGG-----CCGGCCGUcCUGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 16147 0.74 0.21198
Target:  5'- gCCGCuucuucucGGAGCCGGCaugaaCGGCGGGugGCCGAc -3'
miRNA:   3'- -GGCG--------CCUCGGCCG-----GCCGUCC--UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 16291 0.67 0.531893
Target:  5'- -gGCGGAGUcuagccuggcggccgCGGCCGGCuGGAUCc-- -3'
miRNA:   3'- ggCGCCUCG---------------GCCGGCCGuCCUGGcuc -5'
10845 3' -64.8 NC_002794.1 + 17434 0.66 0.583427
Target:  5'- uCCGCGccGCCGGCgcucgGGCccgcGACCGAGg -3'
miRNA:   3'- -GGCGCcuCGGCCGg----CCGuc--CUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 17673 0.74 0.21198
Target:  5'- aCCGCc--GCCGGCCccGGCGGaGACCGAGc -3'
miRNA:   3'- -GGCGccuCGGCCGG--CCGUC-CUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 18532 0.66 0.620851
Target:  5'- gCCGCGaacgcGAGCaCGaGCaCGGCGGcGACCGcGa -3'
miRNA:   3'- -GGCGC-----CUCG-GC-CG-GCCGUC-CUGGCuC- -5'
10845 3' -64.8 NC_002794.1 + 19518 0.67 0.528269
Target:  5'- gCCGCucGGAgcGCCGGCgCGGCGcGGcccGCCGGu -3'
miRNA:   3'- -GGCG--CCU--CGGCCG-GCCGU-CC---UGGCUc -5'
10845 3' -64.8 NC_002794.1 + 20376 0.68 0.519252
Target:  5'- gCGcCGGAucGUcgacgCGGUgCGGCGGGACCGGGa -3'
miRNA:   3'- gGC-GCCU--CG-----GCCG-GCCGUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 21873 0.7 0.408792
Target:  5'- uCCGCGaGGCCGGCCG-CGGGGuguCCGcGg -3'
miRNA:   3'- -GGCGCcUCGGCCGGCcGUCCU---GGCuC- -5'
10845 3' -64.8 NC_002794.1 + 22919 0.67 0.550137
Target:  5'- aCCGCGGccGCCaaaccggcacccaucGGCUGGCcgacGGGCCGGc -3'
miRNA:   3'- -GGCGCCu-CGG---------------CCGGCCGu---CCUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 26647 0.7 0.408792
Target:  5'- cCCGgaCGGcGGCCGGCucguCGGCGGGguggagcgccACCGAGa -3'
miRNA:   3'- -GGC--GCC-UCGGCCG----GCCGUCC----------UGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 30064 0.67 0.531893
Target:  5'- cCCGCGGGGuCCGGUCGcccggucgacgaggcGCGcGGCCGGu -3'
miRNA:   3'- -GGCGCCUC-GGCCGGC---------------CGUcCUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 32303 0.77 0.139701
Target:  5'- gCCGCGGcGGCCGcGCCGGCcGcGGCCGGa -3'
miRNA:   3'- -GGCGCC-UCGGC-CGGCCGuC-CUGGCUc -5'
10845 3' -64.8 NC_002794.1 + 32582 0.76 0.168533
Target:  5'- gCgGCGGuGCCggGGCCGGggcCGGGGCCGGGg -3'
miRNA:   3'- -GgCGCCuCGG--CCGGCC---GUCCUGGCUC- -5'
10845 3' -64.8 NC_002794.1 + 32825 0.7 0.408792
Target:  5'- uUCGuCGGccucgcGGCCGGCucaucgguagCGGCAGcGGCCGAGc -3'
miRNA:   3'- -GGC-GCC------UCGGCCG----------GCCGUC-CUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.