miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 5' -57.9 NC_002794.1 + 117032 0.65 0.890427
Target:  5'- cACCCCGgguccgacagcaCgaGGUACGGGCCguccguGAGCCu -3'
miRNA:   3'- uUGGGGCa-----------GaaCCGUGUCUGG------CUCGG- -5'
10845 5' -57.9 NC_002794.1 + 115311 0.65 0.890427
Target:  5'- cGCCgCCGUCc--GCACGGucgccgcggcguCCGGGCCg -3'
miRNA:   3'- uUGG-GGCAGaacCGUGUCu-----------GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 78188 0.65 0.889767
Target:  5'- cGCCCCGcCguacgguccuuuccGCACGGuccuCCGGGCCg -3'
miRNA:   3'- uUGGGGCaGaac-----------CGUGUCu---GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 30079 0.66 0.885093
Target:  5'- cGCCCgGUCgacgaGGCGCGcGGCCGGuCCc -3'
miRNA:   3'- uUGGGgCAGaa---CCGUGU-CUGGCUcGG- -5'
10845 5' -57.9 NC_002794.1 + 23614 0.66 0.885093
Target:  5'- cGACCCCGcg--GGCGCccGGACgCGcGGCCc -3'
miRNA:   3'- -UUGGGGCagaaCCGUG--UCUG-GC-UCGG- -5'
10845 5' -57.9 NC_002794.1 + 99625 0.66 0.885093
Target:  5'- cGGCCCCGUUUc--UGCAGAUCGuGCCc -3'
miRNA:   3'- -UUGGGGCAGAaccGUGUCUGGCuCGG- -5'
10845 5' -57.9 NC_002794.1 + 56171 0.66 0.885093
Target:  5'- cGGCCCCGgugcacGUAgAGcACCGGGCCg -3'
miRNA:   3'- -UUGGGGCagaac-CGUgUC-UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 108462 0.66 0.885093
Target:  5'- --gCCCGcC--GGCACGGGCCGAGg- -3'
miRNA:   3'- uugGGGCaGaaCCGUGUCUGGCUCgg -5'
10845 5' -57.9 NC_002794.1 + 2595 0.66 0.885093
Target:  5'- -cUCCCGUCcaagcaUGGCACcuACCcGGCCg -3'
miRNA:   3'- uuGGGGCAGa-----ACCGUGucUGGcUCGG- -5'
10845 5' -57.9 NC_002794.1 + 18687 0.66 0.883058
Target:  5'- cGCCgCCGUCUccGGCACggcggcggcgguccGGACgucggagccgaCGAGCCg -3'
miRNA:   3'- uUGG-GGCAGAa-CCGUG--------------UCUG-----------GCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 22935 0.66 0.878235
Target:  5'- cGGCaCCCaUCggcUGGCcgACGGGCCGGcGCCg -3'
miRNA:   3'- -UUG-GGGcAGa--ACCG--UGUCUGGCU-CGG- -5'
10845 5' -57.9 NC_002794.1 + 8521 0.66 0.877537
Target:  5'- aGGCCCCGccccugcacgaagUCUgGGaGCAGACCGuccgcGCCu -3'
miRNA:   3'- -UUGGGGC-------------AGAaCCgUGUCUGGCu----CGG- -5'
10845 5' -57.9 NC_002794.1 + 86540 0.66 0.876838
Target:  5'- uGCCCCGggccgagccGGgACGGAugcuCCGGGCCg -3'
miRNA:   3'- uUGGGGCagaa-----CCgUGUCU----GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 86372 0.66 0.876838
Target:  5'- uGCCCCGggccgagccGGgACGGAugcuCCGGGCCg -3'
miRNA:   3'- uUGGGGCagaa-----CCgUGUCU----GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 86180 0.66 0.876838
Target:  5'- uGCCCCGggccgagccGGgACGGAugcuCCGGGCCg -3'
miRNA:   3'- uUGGGGCagaa-----CCgUGUCU----GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 113286 0.66 0.874019
Target:  5'- -uCCCgCGUCUgcucGGCGCAGcGcucguccgcuacccgCCGGGCCg -3'
miRNA:   3'- uuGGG-GCAGAa---CCGUGUC-U---------------GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 123800 0.66 0.871167
Target:  5'- uGGCgCCGUUcgggGGCGCGGA-CGAGCa -3'
miRNA:   3'- -UUGgGGCAGaa--CCGUGUCUgGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 144295 0.66 0.871167
Target:  5'- gAACCCgGUggaCgaGGaggACGGGCCGAGCUg -3'
miRNA:   3'- -UUGGGgCA---GaaCCg--UGUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 48871 0.66 0.871167
Target:  5'- -uCCCCGUCggcGGCcaggugGCAGGCCagcguuGCCg -3'
miRNA:   3'- uuGGGGCAGaa-CCG------UGUCUGGcu----CGG- -5'
10845 5' -57.9 NC_002794.1 + 143396 0.66 0.871167
Target:  5'- cAGCUgCUGcUCgaccGGCGCGGGCCGGGCg -3'
miRNA:   3'- -UUGG-GGC-AGaa--CCGUGUCUGGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.