miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 5' -57.9 NC_002794.1 + 50402 1.08 0.00271
Target:  5'- cAACCCCGUCUUGGCACAGACCGAGCCc -3'
miRNA:   3'- -UUGGGGCAGAACCGUGUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 143112 0.79 0.218355
Target:  5'- cAGCCCCGcUCggccgUGGCGCAGGucUCGGGCCa -3'
miRNA:   3'- -UUGGGGC-AGa----ACCGUGUCU--GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 24184 0.75 0.401244
Target:  5'- cGACCCCGc---GGCACcgAGACCGAGCg -3'
miRNA:   3'- -UUGGGGCagaaCCGUG--UCUGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 17675 0.75 0.401244
Target:  5'- cGCCgCCGgccccGGCGgAGACCGAGCCg -3'
miRNA:   3'- uUGG-GGCagaa-CCGUgUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 49778 0.74 0.418144
Target:  5'- -uCCCCGgaggCgguugGGCACGaGCCGAGCCa -3'
miRNA:   3'- uuGGGGCa---Gaa---CCGUGUcUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 65163 0.73 0.480519
Target:  5'- -gUCCCGUCcgUGGCGCcgAGACCGGcggguGCCg -3'
miRNA:   3'- uuGGGGCAGa-ACCGUG--UCUGGCU-----CGG- -5'
10845 5' -57.9 NC_002794.1 + 44479 0.73 0.489802
Target:  5'- cGCCCCGUCgaaacagagacgUUgucucacggcGGCcCAGACCGGGCCc -3'
miRNA:   3'- uUGGGGCAG------------AA----------CCGuGUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 14552 0.73 0.489802
Target:  5'- -cCCCCGUCgacGCGCGGGaggCGAGCCg -3'
miRNA:   3'- uuGGGGCAGaacCGUGUCUg--GCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 180889 0.73 0.489802
Target:  5'- cGCCCgGUCUcGGcCGCGGACUcGGCCg -3'
miRNA:   3'- uUGGGgCAGAaCC-GUGUCUGGcUCGG- -5'
10845 5' -57.9 NC_002794.1 + 101017 0.73 0.499168
Target:  5'- -uUCCUGUCgggGGaCGCGGGCCGGGCg -3'
miRNA:   3'- uuGGGGCAGaa-CC-GUGUCUGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 183538 0.73 0.508612
Target:  5'- cGCCCCGUCcgcccggGGaCACuGcgcGCCGAGCCg -3'
miRNA:   3'- uUGGGGCAGaa-----CC-GUGuC---UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 150801 0.73 0.518131
Target:  5'- aGGCCCCGc---GGCGgAcGGCCGAGCCg -3'
miRNA:   3'- -UUGGGGCagaaCCGUgU-CUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 155004 0.72 0.547089
Target:  5'- uGCCgCGUCUguUGGUACAGGCUcucGGCCa -3'
miRNA:   3'- uUGGgGCAGA--ACCGUGUCUGGc--UCGG- -5'
10845 5' -57.9 NC_002794.1 + 181364 0.72 0.556859
Target:  5'- cGGCCCgGUUgagGGuCACGGGCCcGGCCg -3'
miRNA:   3'- -UUGGGgCAGaa-CC-GUGUCUGGcUCGG- -5'
10845 5' -57.9 NC_002794.1 + 53173 0.71 0.586442
Target:  5'- -uCCCCGaagCUcGGCAgGGcccaGCCGAGCCa -3'
miRNA:   3'- uuGGGGCa--GAaCCGUgUC----UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 75189 0.71 0.596374
Target:  5'- cAACgCCGUCca-GCAgAGACCGAGUCg -3'
miRNA:   3'- -UUGgGGCAGaacCGUgUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 152873 0.71 0.616307
Target:  5'- uAAUCUCGUCUucacgcucuucuUGGCGCAGACCcugcacGCCa -3'
miRNA:   3'- -UUGGGGCAGA------------ACCGUGUCUGGcu----CGG- -5'
10845 5' -57.9 NC_002794.1 + 43017 0.71 0.616307
Target:  5'- uAGCUCCGcaggUCgucGGCcuccaucgcgcgGCAGGCCGAGCCg -3'
miRNA:   3'- -UUGGGGC----AGaa-CCG------------UGUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 102010 0.7 0.655253
Target:  5'- gGACCUCGgccuacaUCgaGGCGCAuuucGCCGAGCCg -3'
miRNA:   3'- -UUGGGGC-------AGaaCCGUGUc---UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 68459 0.7 0.670186
Target:  5'- --gCCCGUUUcuucacGGCGCAGuggggcacggaggcgGCCGAGCCg -3'
miRNA:   3'- uugGGGCAGAa-----CCGUGUC---------------UGGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.