miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 5' -57.9 NC_002794.1 + 25653 0.66 0.871167
Target:  5'- cGGCCCCGUCgc--CACGaccGCCGAGCa -3'
miRNA:   3'- -UUGGGGCAGaaccGUGUc--UGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 107043 0.66 0.863896
Target:  5'- gGACCCCcgcGUCggaGGCgGCGGGCgCGGcGCCg -3'
miRNA:   3'- -UUGGGG---CAGaa-CCG-UGUCUG-GCU-CGG- -5'
10845 5' -57.9 NC_002794.1 + 188016 0.66 0.863896
Target:  5'- cGACgCCCGUCUcGGCGCccucgccgucccGGACgcggCGAGUCu -3'
miRNA:   3'- -UUG-GGGCAGAaCCGUG------------UCUG----GCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 40573 0.66 0.863896
Target:  5'- cGCgCCGUCcUGGcCGCGGGCCcucuccuccGAGUCg -3'
miRNA:   3'- uUGgGGCAGaACC-GUGUCUGG---------CUCGG- -5'
10845 5' -57.9 NC_002794.1 + 79360 0.66 0.861675
Target:  5'- aGAgCCUGUCggacacgcuggacgaGGCGCAGACCcguccccuguacGAGCCc -3'
miRNA:   3'- -UUgGGGCAGaa-------------CCGUGUCUGG------------CUCGG- -5'
10845 5' -57.9 NC_002794.1 + 186015 0.66 0.856425
Target:  5'- cGCUCCGggcccgGGCcCGGAcCCGGGCCc -3'
miRNA:   3'- uUGGGGCagaa--CCGuGUCU-GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 181608 0.66 0.856425
Target:  5'- cGCCCCGUUgccGCAUcucgcacguguaGGGCgGAGCCc -3'
miRNA:   3'- uUGGGGCAGaacCGUG------------UCUGgCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 3855 0.66 0.856425
Target:  5'- gAGCCCCGgaccGGCAUAuaaGCCGGGUCc -3'
miRNA:   3'- -UUGGGGCagaaCCGUGUc--UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 80412 0.67 0.848761
Target:  5'- cGGCCCaGg--UGGCGcCGGGCgGGGCCg -3'
miRNA:   3'- -UUGGGgCagaACCGU-GUCUGgCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 110433 0.67 0.848761
Target:  5'- cGGCUgucgUCGUCggUGGCGgAGGCCggcGAGCCg -3'
miRNA:   3'- -UUGG----GGCAGa-ACCGUgUCUGG---CUCGG- -5'
10845 5' -57.9 NC_002794.1 + 118942 0.67 0.848761
Target:  5'- cGAgCCCGg---GGUGCAGGaaGAGCCg -3'
miRNA:   3'- -UUgGGGCagaaCCGUGUCUggCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 83022 0.67 0.848761
Target:  5'- cGCCCCGUCccGGC----GCCGGGCg -3'
miRNA:   3'- uUGGGGCAGaaCCGugucUGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 140894 0.67 0.847984
Target:  5'- uGACCCUGUCgaccgcgUGGCgggaccuGCAGGCgCGcuGCCu -3'
miRNA:   3'- -UUGGGGCAGa------ACCG-------UGUCUG-GCu-CGG- -5'
10845 5' -57.9 NC_002794.1 + 56243 0.67 0.840909
Target:  5'- cACUCC-UCgcaguagcagGGCACGGccACCGGGCCg -3'
miRNA:   3'- uUGGGGcAGaa--------CCGUGUC--UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 23942 0.67 0.840909
Target:  5'- gAGCCCgGcCgcGGCGCAcuuggcuCCGAGCCa -3'
miRNA:   3'- -UUGGGgCaGaaCCGUGUcu-----GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 54850 0.67 0.832877
Target:  5'- cAACgCCCGUaggccGGCGCGGGCCGccgcAGCg -3'
miRNA:   3'- -UUG-GGGCAgaa--CCGUGUCUGGC----UCGg -5'
10845 5' -57.9 NC_002794.1 + 128021 0.67 0.832877
Target:  5'- cGCCCCGUC--GGCugAcACCccgcGGGCCa -3'
miRNA:   3'- uUGGGGCAGaaCCGugUcUGG----CUCGG- -5'
10845 5' -57.9 NC_002794.1 + 64476 0.67 0.832877
Target:  5'- cGACCUCGccggCUUGaacGUGCAGGCCG-GCCc -3'
miRNA:   3'- -UUGGGGCa---GAAC---CGUGUCUGGCuCGG- -5'
10845 5' -57.9 NC_002794.1 + 152103 0.67 0.830433
Target:  5'- uACCgCCGUCUggGGCuuGCuGcgccgcuccgcccuGCCGAGCCg -3'
miRNA:   3'- uUGG-GGCAGAa-CCG--UGuC--------------UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 39428 0.67 0.824671
Target:  5'- cGGCCCCGuggUCUUcGGCAU--GCUGAGCa -3'
miRNA:   3'- -UUGGGGC---AGAA-CCGUGucUGGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.