miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10845 5' -57.9 NC_002794.1 + 535 0.7 0.68604
Target:  5'- cGCCCCuUCUUGGCAUcuuGCCcGGCCu -3'
miRNA:   3'- uUGGGGcAGAACCGUGuc-UGGcUCGG- -5'
10845 5' -57.9 NC_002794.1 + 769 0.69 0.725125
Target:  5'- gGGCCCgCGgugcaUUUGGCACGGugccaACCGuGCCg -3'
miRNA:   3'- -UUGGG-GCa----GAACCGUGUC-----UGGCuCGG- -5'
10845 5' -57.9 NC_002794.1 + 2595 0.66 0.885093
Target:  5'- -cUCCCGUCcaagcaUGGCACcuACCcGGCCg -3'
miRNA:   3'- uuGGGGCAGa-----ACCGUGucUGGcUCGG- -5'
10845 5' -57.9 NC_002794.1 + 3855 0.66 0.856425
Target:  5'- gAGCCCCGgaccGGCAUAuaaGCCGGGUCc -3'
miRNA:   3'- -UUGGGGCagaaCCGUGUc--UGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 8521 0.66 0.877537
Target:  5'- aGGCCCCGccccugcacgaagUCUgGGaGCAGACCGuccgcGCCu -3'
miRNA:   3'- -UUGGGGC-------------AGAaCCgUGUCUGGCu----CGG- -5'
10845 5' -57.9 NC_002794.1 + 14552 0.73 0.489802
Target:  5'- -cCCCCGUCgacGCGCGGGaggCGAGCCg -3'
miRNA:   3'- uuGGGGCAGaacCGUGUCUg--GCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 17675 0.75 0.401244
Target:  5'- cGCCgCCGgccccGGCGgAGACCGAGCCg -3'
miRNA:   3'- uUGG-GGCagaa-CCGUgUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 18687 0.66 0.883058
Target:  5'- cGCCgCCGUCUccGGCACggcggcggcgguccGGACgucggagccgaCGAGCCg -3'
miRNA:   3'- uUGG-GGCAGAa-CCGUG--------------UCUG-----------GCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 22935 0.66 0.878235
Target:  5'- cGGCaCCCaUCggcUGGCcgACGGGCCGGcGCCg -3'
miRNA:   3'- -UUG-GGGcAGa--ACCG--UGUCUGGCU-CGG- -5'
10845 5' -57.9 NC_002794.1 + 23614 0.66 0.885093
Target:  5'- cGACCCCGcg--GGCGCccGGACgCGcGGCCc -3'
miRNA:   3'- -UUGGGGCagaaCCGUG--UCUG-GC-UCGG- -5'
10845 5' -57.9 NC_002794.1 + 23942 0.67 0.840909
Target:  5'- gAGCCCgGcCgcGGCGCAcuuggcuCCGAGCCa -3'
miRNA:   3'- -UUGGGgCaGaaCCGUGUcu-----GGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 24184 0.75 0.401244
Target:  5'- cGACCCCGc---GGCACcgAGACCGAGCg -3'
miRNA:   3'- -UUGGGGCagaaCCGUG--UCUGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 25653 0.66 0.871167
Target:  5'- cGGCCCCGUCgc--CACGaccGCCGAGCa -3'
miRNA:   3'- -UUGGGGCAGaaccGUGUc--UGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 30079 0.66 0.885093
Target:  5'- cGCCCgGUCgacgaGGCGCGcGGCCGGuCCc -3'
miRNA:   3'- uUGGGgCAGaa---CCGUGU-CUGGCUcGG- -5'
10845 5' -57.9 NC_002794.1 + 37358 0.69 0.695896
Target:  5'- gGGCCCCagguaGUCgaagcucgGGCGCAGGCCGucgaAGUCg -3'
miRNA:   3'- -UUGGGG-----CAGaa------CCGUGUCUGGC----UCGG- -5'
10845 5' -57.9 NC_002794.1 + 39428 0.67 0.824671
Target:  5'- cGGCCCCGuggUCUUcGGCAU--GCUGAGCa -3'
miRNA:   3'- -UUGGGGC---AGAA-CCGUGucUGGCUCGg -5'
10845 5' -57.9 NC_002794.1 + 40573 0.66 0.863896
Target:  5'- cGCgCCGUCcUGGcCGCGGGCCcucuccuccGAGUCg -3'
miRNA:   3'- uUGgGGCAGaACC-GUGUCUGG---------CUCGG- -5'
10845 5' -57.9 NC_002794.1 + 43017 0.71 0.616307
Target:  5'- uAGCUCCGcaggUCgucGGCcuccaucgcgcgGCAGGCCGAGCCg -3'
miRNA:   3'- -UUGGGGC----AGaa-CCG------------UGUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 44479 0.73 0.489802
Target:  5'- cGCCCCGUCgaaacagagacgUUgucucacggcGGCcCAGACCGGGCCc -3'
miRNA:   3'- uUGGGGCAG------------AA----------CCGuGUCUGGCUCGG- -5'
10845 5' -57.9 NC_002794.1 + 44562 0.68 0.772198
Target:  5'- cGGCgCCCGUUgacGuCACgcgGGACCGAGCCa -3'
miRNA:   3'- -UUG-GGGCAGaacC-GUG---UCUGGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.