miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 3' -49.5 NC_002794.1 + 131551 0.66 0.999733
Target:  5'- cGGCcUCGCccGUGGUCGG-CGCGgCGc -3'
miRNA:   3'- -CCGuAGCGcuUAUCAGCUaGUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 179125 0.66 0.999664
Target:  5'- gGGCG-CGCGGucGGUCGAU--CGUCu -3'
miRNA:   3'- -CCGUaGCGCUuaUCAGCUAguGCAGc -5'
10846 3' -49.5 NC_002794.1 + 118118 0.66 0.999664
Target:  5'- cGGCGUCgGCGAAgaucucggggaAGUCGGggugCACcGUCa -3'
miRNA:   3'- -CCGUAG-CGCUUa----------UCAGCUa---GUG-CAGc -5'
10846 3' -49.5 NC_002794.1 + 105967 0.66 0.999581
Target:  5'- gGGCcgcCGCGGAcgAGUuucCGGUCGCGuUCGa -3'
miRNA:   3'- -CCGua-GCGCUUa-UCA---GCUAGUGC-AGC- -5'
10846 3' -49.5 NC_002794.1 + 32893 0.66 0.999581
Target:  5'- cGGCAUCauggaGCGGAaccAGUCGGgcggcagCAgGUCGg -3'
miRNA:   3'- -CCGUAG-----CGCUUa--UCAGCUa------GUgCAGC- -5'
10846 3' -49.5 NC_002794.1 + 89711 0.66 0.999581
Target:  5'- cGGCGcCGCGGu--GcCGAUCcgcgcgGCGUCGg -3'
miRNA:   3'- -CCGUaGCGCUuauCaGCUAG------UGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 117477 0.66 0.99948
Target:  5'- cGGCGuacUCGUGGAUGGcgugcagguccUCGAUCAgGUg- -3'
miRNA:   3'- -CCGU---AGCGCUUAUC-----------AGCUAGUgCAgc -5'
10846 3' -49.5 NC_002794.1 + 96379 0.66 0.99948
Target:  5'- uGGCGccgaGCGAGUGGaUGGUCGCGcCu -3'
miRNA:   3'- -CCGUag--CGCUUAUCaGCUAGUGCaGc -5'
10846 3' -49.5 NC_002794.1 + 49671 0.66 0.99948
Target:  5'- cGGUA-CGCGAAgcgcaagcGGaCGAgUCGCGUCGg -3'
miRNA:   3'- -CCGUaGCGCUUa-------UCaGCU-AGUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 49948 0.66 0.99948
Target:  5'- gGGCAggCGCucccGGUCGccgGUCGCGUCa -3'
miRNA:   3'- -CCGUa-GCGcuuaUCAGC---UAGUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 42465 0.66 0.999358
Target:  5'- uGGCGUCGUccau-GUCGcgCGCGcCGg -3'
miRNA:   3'- -CCGUAGCGcuuauCAGCuaGUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 72476 0.67 0.999213
Target:  5'- cGGCggCGcCGAAaAGaCGAUCACGcagUCGg -3'
miRNA:   3'- -CCGuaGC-GCUUaUCaGCUAGUGC---AGC- -5'
10846 3' -49.5 NC_002794.1 + 30392 0.67 0.999213
Target:  5'- uGGCcgccCGCGAcgugaugccGUGGUCGA--ACGUCGu -3'
miRNA:   3'- -CCGua--GCGCU---------UAUCAGCUagUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 125584 0.67 0.99904
Target:  5'- aGCGacaGCGAggAGUCGGUCACcuUCGa -3'
miRNA:   3'- cCGUag-CGCUuaUCAGCUAGUGc-AGC- -5'
10846 3' -49.5 NC_002794.1 + 134172 0.67 0.99904
Target:  5'- uGGCcgCGCGGAUGGccaccUCGuAUCGgcuggugggggcCGUCGg -3'
miRNA:   3'- -CCGuaGCGCUUAUC-----AGC-UAGU------------GCAGC- -5'
10846 3' -49.5 NC_002794.1 + 89876 0.67 0.99904
Target:  5'- uGGCGccUgGCGAAccGUCGAcgACGUCGc -3'
miRNA:   3'- -CCGU--AgCGCUUauCAGCUagUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 113754 0.67 0.99904
Target:  5'- aGGCG-CGCGAGgguGUCGG-CACcuGUCGc -3'
miRNA:   3'- -CCGUaGCGCUUau-CAGCUaGUG--CAGC- -5'
10846 3' -49.5 NC_002794.1 + 37966 0.67 0.998596
Target:  5'- cGGCGgcUCGUGGuacgAGcCGAUCGCGgUCa -3'
miRNA:   3'- -CCGU--AGCGCUua--UCaGCUAGUGC-AGc -5'
10846 3' -49.5 NC_002794.1 + 180926 0.67 0.998596
Target:  5'- cGGCGcCGuCGGA-GGUCGGucUCGCGUCc -3'
miRNA:   3'- -CCGUaGC-GCUUaUCAGCU--AGUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 143300 0.67 0.998596
Target:  5'- gGGCGggugcagCGCGGcgggAUggaAGUCGGUCGCGUg- -3'
miRNA:   3'- -CCGUa------GCGCU----UA---UCAGCUAGUGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.