miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 3' -49.5 NC_002794.1 + 48682 1.14 0.010079
Target:  5'- cGGCAUCGCGAAUAGUCGAUCACGUCGg -3'
miRNA:   3'- -CCGUAGCGCUUAUCAGCUAGUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 32560 0.81 0.610032
Target:  5'- cGGCAgcCGCGGAUAGUCGcgCGCGgCGg -3'
miRNA:   3'- -CCGUa-GCGCUUAUCAGCuaGUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 116359 0.71 0.978668
Target:  5'- cGGCcgCGCGGuccgaccGGUCGGUgGCGUgCGg -3'
miRNA:   3'- -CCGuaGCGCUua-----UCAGCUAgUGCA-GC- -5'
10846 3' -49.5 NC_002794.1 + 146836 0.71 0.980887
Target:  5'- cGUuuggCGCGAG-AGUCGGUgCGCGUCGu -3'
miRNA:   3'- cCGua--GCGCUUaUCAGCUA-GUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 139136 0.71 0.980887
Target:  5'- cGGCGUCGCG-GUAGUUGGuguucucgcauUCgACGUCc -3'
miRNA:   3'- -CCGUAGCGCuUAUCAGCU-----------AG-UGCAGc -5'
10846 3' -49.5 NC_002794.1 + 191001 0.71 0.980887
Target:  5'- cGGCGUCGCGAucGGccguUCGAUCggcACGUUc -3'
miRNA:   3'- -CCGUAGCGCUuaUC----AGCUAG---UGCAGc -5'
10846 3' -49.5 NC_002794.1 + 129789 0.7 0.984802
Target:  5'- cGGCGUCGCcgGAAUucgcuGUCGGacCGCGUCu -3'
miRNA:   3'- -CCGUAGCG--CUUAu----CAGCUa-GUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 36233 0.7 0.986514
Target:  5'- aGGCccgGUCGauauaGGccccGUAGUCGAUgGCGUCGu -3'
miRNA:   3'- -CCG---UAGCg----CU----UAUCAGCUAgUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 105719 0.7 0.990772
Target:  5'- aGGCgAUCGCGGcgGccGUCGGgaaaGCGUCGu -3'
miRNA:   3'- -CCG-UAGCGCUuaU--CAGCUag--UGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 182888 0.69 0.993063
Target:  5'- cGGCGUgaucuccacgcugaaGCGGauGUAGUCGAUguCGUCGc -3'
miRNA:   3'- -CCGUAg--------------CGCU--UAUCAGCUAguGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 118283 0.69 0.994721
Target:  5'- cGGCGUCGgGGAccgcGcCGggCGCGUCGc -3'
miRNA:   3'- -CCGUAGCgCUUau--CaGCuaGUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 94442 0.69 0.995455
Target:  5'- aGGCcuacggCGCGGAggAGUCGGUgGCGaCGg -3'
miRNA:   3'- -CCGua----GCGCUUa-UCAGCUAgUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 106325 0.69 0.995455
Target:  5'- cGCG-CGCGAcgGGUCGAcgguUCGCcggGUCGa -3'
miRNA:   3'- cCGUaGCGCUuaUCAGCU----AGUG---CAGC- -5'
10846 3' -49.5 NC_002794.1 + 156507 0.68 0.996674
Target:  5'- cGGCccguugAUCGCGAGUccgcggugagGGuUCcGUCGCGUCGg -3'
miRNA:   3'- -CCG------UAGCGCUUA----------UC-AGcUAGUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 145896 0.68 0.996674
Target:  5'- cGGCGagCGCGAcgggggAGUCGAcCGCGcCGa -3'
miRNA:   3'- -CCGUa-GCGCUua----UCAGCUaGUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 31481 0.67 0.998315
Target:  5'- ----cUGCGAGUAGUUGAUgaugCGCGUCa -3'
miRNA:   3'- ccguaGCGCUUAUCAGCUA----GUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 128169 0.67 0.998315
Target:  5'- cGCGcCGCGGAcgGGUCGGUgAccuCGUCGg -3'
miRNA:   3'- cCGUaGCGCUUa-UCAGCUAgU---GCAGC- -5'
10846 3' -49.5 NC_002794.1 + 37966 0.67 0.998596
Target:  5'- cGGCGgcUCGUGGuacgAGcCGAUCGCGgUCa -3'
miRNA:   3'- -CCGU--AGCGCUua--UCaGCUAGUGC-AGc -5'
10846 3' -49.5 NC_002794.1 + 180926 0.67 0.998596
Target:  5'- cGGCGcCGuCGGA-GGUCGGucUCGCGUCc -3'
miRNA:   3'- -CCGUaGC-GCUUaUCAGCU--AGUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 143300 0.67 0.998596
Target:  5'- gGGCGggugcagCGCGGcgggAUggaAGUCGGUCGCGUg- -3'
miRNA:   3'- -CCGUa------GCGCU----UA---UCAGCUAGUGCAgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.