Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10846 | 3' | -49.5 | NC_002794.1 | + | 128169 | 0.67 | 0.998315 |
Target: 5'- cGCGcCGCGGAcgGGUCGGUgAccuCGUCGg -3' miRNA: 3'- cCGUaGCGCUUa-UCAGCUAgU---GCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 31481 | 0.67 | 0.998315 |
Target: 5'- ----cUGCGAGUAGUUGAUgaugCGCGUCa -3' miRNA: 3'- ccguaGCGCUUAUCAGCUA----GUGCAGc -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 156507 | 0.68 | 0.996674 |
Target: 5'- cGGCccguugAUCGCGAGUccgcggugagGGuUCcGUCGCGUCGg -3' miRNA: 3'- -CCG------UAGCGCUUA----------UC-AGcUAGUGCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 145896 | 0.68 | 0.996674 |
Target: 5'- cGGCGagCGCGAcgggggAGUCGAcCGCGcCGa -3' miRNA: 3'- -CCGUa-GCGCUua----UCAGCUaGUGCaGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 106325 | 0.69 | 0.995455 |
Target: 5'- cGCG-CGCGAcgGGUCGAcgguUCGCcggGUCGa -3' miRNA: 3'- cCGUaGCGCUuaUCAGCU----AGUG---CAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 94442 | 0.69 | 0.995455 |
Target: 5'- aGGCcuacggCGCGGAggAGUCGGUgGCGaCGg -3' miRNA: 3'- -CCGua----GCGCUUa-UCAGCUAgUGCaGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 118283 | 0.69 | 0.994721 |
Target: 5'- cGGCGUCGgGGAccgcGcCGggCGCGUCGc -3' miRNA: 3'- -CCGUAGCgCUUau--CaGCuaGUGCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 182888 | 0.69 | 0.993063 |
Target: 5'- cGGCGUgaucuccacgcugaaGCGGauGUAGUCGAUguCGUCGc -3' miRNA: 3'- -CCGUAg--------------CGCU--UAUCAGCUAguGCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 105719 | 0.7 | 0.990772 |
Target: 5'- aGGCgAUCGCGGcgGccGUCGGgaaaGCGUCGu -3' miRNA: 3'- -CCG-UAGCGCUuaU--CAGCUag--UGCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 36233 | 0.7 | 0.986514 |
Target: 5'- aGGCccgGUCGauauaGGccccGUAGUCGAUgGCGUCGu -3' miRNA: 3'- -CCG---UAGCg----CU----UAUCAGCUAgUGCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 129789 | 0.7 | 0.984802 |
Target: 5'- cGGCGUCGCcgGAAUucgcuGUCGGacCGCGUCu -3' miRNA: 3'- -CCGUAGCG--CUUAu----CAGCUa-GUGCAGc -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 191001 | 0.71 | 0.980887 |
Target: 5'- cGGCGUCGCGAucGGccguUCGAUCggcACGUUc -3' miRNA: 3'- -CCGUAGCGCUuaUC----AGCUAG---UGCAGc -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 146836 | 0.71 | 0.980887 |
Target: 5'- cGUuuggCGCGAG-AGUCGGUgCGCGUCGu -3' miRNA: 3'- cCGua--GCGCUUaUCAGCUA-GUGCAGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 139136 | 0.71 | 0.980887 |
Target: 5'- cGGCGUCGCG-GUAGUUGGuguucucgcauUCgACGUCc -3' miRNA: 3'- -CCGUAGCGCuUAUCAGCU-----------AG-UGCAGc -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 116359 | 0.71 | 0.978668 |
Target: 5'- cGGCcgCGCGGuccgaccGGUCGGUgGCGUgCGg -3' miRNA: 3'- -CCGuaGCGCUua-----UCAGCUAgUGCA-GC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 32560 | 0.81 | 0.610032 |
Target: 5'- cGGCAgcCGCGGAUAGUCGcgCGCGgCGg -3' miRNA: 3'- -CCGUa-GCGCUUAUCAGCuaGUGCaGC- -5' |
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10846 | 3' | -49.5 | NC_002794.1 | + | 48682 | 1.14 | 0.010079 |
Target: 5'- cGGCAUCGCGAAUAGUCGAUCACGUCGg -3' miRNA: 3'- -CCGUAGCGCUUAUCAGCUAGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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