miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 3' -49.5 NC_002794.1 + 30392 0.67 0.999213
Target:  5'- uGGCcgccCGCGAcgugaugccGUGGUCGA--ACGUCGu -3'
miRNA:   3'- -CCGua--GCGCU---------UAUCAGCUagUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 31481 0.67 0.998315
Target:  5'- ----cUGCGAGUAGUUGAUgaugCGCGUCa -3'
miRNA:   3'- ccguaGCGCUUAUCAGCUA----GUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 32560 0.81 0.610032
Target:  5'- cGGCAgcCGCGGAUAGUCGcgCGCGgCGg -3'
miRNA:   3'- -CCGUa-GCGCUUAUCAGCuaGUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 32893 0.66 0.999581
Target:  5'- cGGCAUCauggaGCGGAaccAGUCGGgcggcagCAgGUCGg -3'
miRNA:   3'- -CCGUAG-----CGCUUa--UCAGCUa------GUgCAGC- -5'
10846 3' -49.5 NC_002794.1 + 36233 0.7 0.986514
Target:  5'- aGGCccgGUCGauauaGGccccGUAGUCGAUgGCGUCGu -3'
miRNA:   3'- -CCG---UAGCg----CU----UAUCAGCUAgUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 37966 0.67 0.998596
Target:  5'- cGGCGgcUCGUGGuacgAGcCGAUCGCGgUCa -3'
miRNA:   3'- -CCGU--AGCGCUua--UCaGCUAGUGC-AGc -5'
10846 3' -49.5 NC_002794.1 + 42465 0.66 0.999358
Target:  5'- uGGCGUCGUccau-GUCGcgCGCGcCGg -3'
miRNA:   3'- -CCGUAGCGcuuauCAGCuaGUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 48682 1.14 0.010079
Target:  5'- cGGCAUCGCGAAUAGUCGAUCACGUCGg -3'
miRNA:   3'- -CCGUAGCGCUUAUCAGCUAGUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 49671 0.66 0.99948
Target:  5'- cGGUA-CGCGAAgcgcaagcGGaCGAgUCGCGUCGg -3'
miRNA:   3'- -CCGUaGCGCUUa-------UCaGCU-AGUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 49948 0.66 0.99948
Target:  5'- gGGCAggCGCucccGGUCGccgGUCGCGUCa -3'
miRNA:   3'- -CCGUa-GCGcuuaUCAGC---UAGUGCAGc -5'
10846 3' -49.5 NC_002794.1 + 72476 0.67 0.999213
Target:  5'- cGGCggCGcCGAAaAGaCGAUCACGcagUCGg -3'
miRNA:   3'- -CCGuaGC-GCUUaUCaGCUAGUGC---AGC- -5'
10846 3' -49.5 NC_002794.1 + 89711 0.66 0.999581
Target:  5'- cGGCGcCGCGGu--GcCGAUCcgcgcgGCGUCGg -3'
miRNA:   3'- -CCGUaGCGCUuauCaGCUAG------UGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 89876 0.67 0.99904
Target:  5'- uGGCGccUgGCGAAccGUCGAcgACGUCGc -3'
miRNA:   3'- -CCGU--AgCGCUUauCAGCUagUGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 94442 0.69 0.995455
Target:  5'- aGGCcuacggCGCGGAggAGUCGGUgGCGaCGg -3'
miRNA:   3'- -CCGua----GCGCUUa-UCAGCUAgUGCaGC- -5'
10846 3' -49.5 NC_002794.1 + 96379 0.66 0.99948
Target:  5'- uGGCGccgaGCGAGUGGaUGGUCGCGcCu -3'
miRNA:   3'- -CCGUag--CGCUUAUCaGCUAGUGCaGc -5'
10846 3' -49.5 NC_002794.1 + 105719 0.7 0.990772
Target:  5'- aGGCgAUCGCGGcgGccGUCGGgaaaGCGUCGu -3'
miRNA:   3'- -CCG-UAGCGCUuaU--CAGCUag--UGCAGC- -5'
10846 3' -49.5 NC_002794.1 + 105967 0.66 0.999581
Target:  5'- gGGCcgcCGCGGAcgAGUuucCGGUCGCGuUCGa -3'
miRNA:   3'- -CCGua-GCGCUUa-UCA---GCUAGUGC-AGC- -5'
10846 3' -49.5 NC_002794.1 + 106325 0.69 0.995455
Target:  5'- cGCG-CGCGAcgGGUCGAcgguUCGCcggGUCGa -3'
miRNA:   3'- cCGUaGCGCUuaUCAGCU----AGUG---CAGC- -5'
10846 3' -49.5 NC_002794.1 + 113754 0.67 0.99904
Target:  5'- aGGCG-CGCGAGgguGUCGG-CACcuGUCGc -3'
miRNA:   3'- -CCGUaGCGCUUau-CAGCUaGUG--CAGC- -5'
10846 3' -49.5 NC_002794.1 + 116359 0.71 0.978668
Target:  5'- cGGCcgCGCGGuccgaccGGUCGGUgGCGUgCGg -3'
miRNA:   3'- -CCGuaGCGCUua-----UCAGCUAgUGCA-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.