miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 5' -58.2 NC_002794.1 + 67526 0.66 0.884685
Target:  5'- cGaCGacCGGAUCCGGCUugagcccuccgcccgGGCCGCGccGCa -3'
miRNA:   3'- aC-GC--GCCUAGGCUGG---------------CCGGCGUuaUG- -5'
10846 5' -58.2 NC_002794.1 + 80427 0.66 0.881979
Target:  5'- cGgGCGGggCCGccGCCGGCgGCc---- -3'
miRNA:   3'- aCgCGCCuaGGC--UGGCCGgCGuuaug -5'
10846 5' -58.2 NC_002794.1 + 102869 0.66 0.881979
Target:  5'- gUGCGCcgGGAUCgGuuuCUGGCCGaccuGGUGCc -3'
miRNA:   3'- -ACGCG--CCUAGgCu--GGCCGGCg---UUAUG- -5'
10846 5' -58.2 NC_002794.1 + 13142 0.66 0.881979
Target:  5'- cGCGCGGGUCgucGCCGucccauGCCGCAc--- -3'
miRNA:   3'- aCGCGCCUAGgc-UGGC------CGGCGUuaug -5'
10846 5' -58.2 NC_002794.1 + 146915 0.66 0.881979
Target:  5'- gGCGCGGGgaUCGGCCGGaCGgAGaGCg -3'
miRNA:   3'- aCGCGCCUa-GGCUGGCCgGCgUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 110306 0.66 0.881979
Target:  5'- cGCGgGGAcucUCCGcucGCCG-CCGCGAcGCc -3'
miRNA:   3'- aCGCgCCU---AGGC---UGGCcGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 141921 0.66 0.881979
Target:  5'- cGCGgaacggaucuucCGGAUCCGA-CGGCgGCGAc-- -3'
miRNA:   3'- aCGC------------GCCUAGGCUgGCCGgCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 42660 0.66 0.881979
Target:  5'- aGcCGaCGGcgCCG-CCGGCaCGgGGUACg -3'
miRNA:   3'- aC-GC-GCCuaGGCuGGCCG-GCgUUAUG- -5'
10846 5' -58.2 NC_002794.1 + 81986 0.66 0.877858
Target:  5'- cGCGCGa--CCGuugcccgucgacgacGCCGGCCGCug-ACg -3'
miRNA:   3'- aCGCGCcuaGGC---------------UGGCCGGCGuuaUG- -5'
10846 5' -58.2 NC_002794.1 + 33148 0.66 0.875069
Target:  5'- cUGCG-GGAcCCGACCGuguuCCGCAAg-- -3'
miRNA:   3'- -ACGCgCCUaGGCUGGCc---GGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 40409 0.66 0.875069
Target:  5'- gGuCGCGGggUCGGCCGGCgacucUGCAGa-- -3'
miRNA:   3'- aC-GCGCCuaGGCUGGCCG-----GCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 122296 0.66 0.875069
Target:  5'- gGCGCgaGGAgugCCcGCUGGCCGUcgccGUGCg -3'
miRNA:   3'- aCGCG--CCUa--GGcUGGCCGGCGu---UAUG- -5'
10846 5' -58.2 NC_002794.1 + 75353 0.66 0.867954
Target:  5'- gGCGaCGGuucgccaCCGACCcGCCGCGGccgGCg -3'
miRNA:   3'- aCGC-GCCua-----GGCUGGcCGGCGUUa--UG- -5'
10846 5' -58.2 NC_002794.1 + 94886 0.66 0.867954
Target:  5'- --aGCGGAUCCGGCugaCGGUCGaCGugGCg -3'
miRNA:   3'- acgCGCCUAGGCUG---GCCGGC-GUuaUG- -5'
10846 5' -58.2 NC_002794.1 + 101571 0.66 0.867954
Target:  5'- gGCG-GGAgugCCGGCCG-CCGCGGc-- -3'
miRNA:   3'- aCGCgCCUa--GGCUGGCcGGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 54250 0.66 0.867954
Target:  5'- aGCGCGcGGUCC-ACgGcGCCGCGucgggccaaaccGUGCa -3'
miRNA:   3'- aCGCGC-CUAGGcUGgC-CGGCGU------------UAUG- -5'
10846 5' -58.2 NC_002794.1 + 100394 0.66 0.867954
Target:  5'- gGCGUGGA--CGACguggcgUGGCCGCuGUACc -3'
miRNA:   3'- aCGCGCCUagGCUG------GCCGGCGuUAUG- -5'
10846 5' -58.2 NC_002794.1 + 91572 0.66 0.867954
Target:  5'- gGCGCcgcuGAugaacuacUCCGAgUGGCCGCuGGUGCg -3'
miRNA:   3'- aCGCGc---CU--------AGGCUgGCCGGCG-UUAUG- -5'
10846 5' -58.2 NC_002794.1 + 106235 0.66 0.867954
Target:  5'- cGCGCucGGGUCgcaGACCG-CCGCGAaccgGCg -3'
miRNA:   3'- aCGCG--CCUAGg--CUGGCcGGCGUUa---UG- -5'
10846 5' -58.2 NC_002794.1 + 87351 0.66 0.867954
Target:  5'- aGCaGCGGGUCCGGC-GGCgaGCG--GCg -3'
miRNA:   3'- aCG-CGCCUAGGCUGgCCGg-CGUuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.