miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 5' -58.2 NC_002794.1 + 48721 1.08 0.002645
Target:  5'- gUGCGCGGAUCCGACCGGCCGCAAUACc -3'
miRNA:   3'- -ACGCGCCUAGGCUGGCCGGCGUUAUG- -5'
10846 5' -58.2 NC_002794.1 + 116363 0.81 0.171648
Target:  5'- cGCGCGG-UCCGACCGGUCGguGgcgUGCg -3'
miRNA:   3'- aCGCGCCuAGGCUGGCCGGCguU---AUG- -5'
10846 5' -58.2 NC_002794.1 + 100745 0.79 0.217556
Target:  5'- cGCGCGGAgcgcgucuaucgCUGGCCGGUCGCGgaGUACa -3'
miRNA:   3'- aCGCGCCUa-----------GGCUGGCCGGCGU--UAUG- -5'
10846 5' -58.2 NC_002794.1 + 47778 0.79 0.223849
Target:  5'- cGCGCaGGU-CGAgCGGCCGCAGUACa -3'
miRNA:   3'- aCGCGcCUAgGCUgGCCGGCGUUAUG- -5'
10846 5' -58.2 NC_002794.1 + 187224 0.79 0.234681
Target:  5'- --aGCGGcUCCGGCUGGCCGCAGcACa -3'
miRNA:   3'- acgCGCCuAGGCUGGCCGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 104879 0.78 0.257663
Target:  5'- gGCGCGuGAagCgGGCCGGCCGCGAgGCg -3'
miRNA:   3'- aCGCGC-CUa-GgCUGGCCGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 23920 0.77 0.309097
Target:  5'- aGCGUGGGcgagcgagcgaUCCGAgcCCGGCCGCGGcGCa -3'
miRNA:   3'- aCGCGCCU-----------AGGCU--GGCCGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 93994 0.76 0.330309
Target:  5'- gGCGCGGAcgCCGgcGCCGGCgGCGGgccgGCg -3'
miRNA:   3'- aCGCGCCUa-GGC--UGGCCGgCGUUa---UG- -5'
10846 5' -58.2 NC_002794.1 + 180873 0.76 0.337614
Target:  5'- gGCgGCGGAUCCGGCgcgcccggucuCGGCCGCGGa-- -3'
miRNA:   3'- aCG-CGCCUAGGCUG-----------GCCGGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 13806 0.76 0.337614
Target:  5'- cGCGaCGGGcCCGGCCGGCgGCGAcgGCc -3'
miRNA:   3'- aCGC-GCCUaGGCUGGCCGgCGUUa-UG- -5'
10846 5' -58.2 NC_002794.1 + 18249 0.76 0.345036
Target:  5'- cGCGCGG--CCGACCGGCgacCGCGAgaUGCg -3'
miRNA:   3'- aCGCGCCuaGGCUGGCCG---GCGUU--AUG- -5'
10846 5' -58.2 NC_002794.1 + 108602 0.76 0.352575
Target:  5'- gGCGCGG--CCGACCuGGUCGCGGUGg -3'
miRNA:   3'- aCGCGCCuaGGCUGG-CCGGCGUUAUg -5'
10846 5' -58.2 NC_002794.1 + 99706 0.76 0.359459
Target:  5'- cGcCGCGGAuguucuuUCgCGACCGGCCGUAcGUGCu -3'
miRNA:   3'- aC-GCGCCU-------AG-GCUGGCCGGCGU-UAUG- -5'
10846 5' -58.2 NC_002794.1 + 105408 0.75 0.375882
Target:  5'- cGCGCGGAUCuCGGCCuccaggguGGCCGCcgccGCg -3'
miRNA:   3'- aCGCGCCUAG-GCUGG--------CCGGCGuua-UG- -5'
10846 5' -58.2 NC_002794.1 + 112329 0.75 0.383879
Target:  5'- gGCGgGGAgcgcgCCGGCCGGCgGCGccgGCg -3'
miRNA:   3'- aCGCgCCUa----GGCUGGCCGgCGUua-UG- -5'
10846 5' -58.2 NC_002794.1 + 84965 0.74 0.416974
Target:  5'- -aCGCGGAUCCuuggccCCGGCCGCGAaACc -3'
miRNA:   3'- acGCGCCUAGGcu----GGCCGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 150306 0.74 0.416974
Target:  5'- gGCaGCGGAUC--ACCGGCCGCGucuacGUGCa -3'
miRNA:   3'- aCG-CGCCUAGgcUGGCCGGCGU-----UAUG- -5'
10846 5' -58.2 NC_002794.1 + 188355 0.73 0.469726
Target:  5'- cGCGCccGUCCGGCCGGCgGCGGc-- -3'
miRNA:   3'- aCGCGccUAGGCUGGCCGgCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 124256 0.73 0.478848
Target:  5'- cGCGCGGGUagucgCCGGCCaGCCGCc--GCg -3'
miRNA:   3'- aCGCGCCUA-----GGCUGGcCGGCGuuaUG- -5'
10846 5' -58.2 NC_002794.1 + 76537 0.73 0.488057
Target:  5'- gGcCGCGGcgCCGACgCGGUCGCGcgccggGUACu -3'
miRNA:   3'- aC-GCGCCuaGGCUG-GCCGGCGU------UAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.