miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 5' -58.2 NC_002794.1 + 185260 0.66 0.867954
Target:  5'- cGCcaGCGGAcgCCG-CCGGCCG-AGUGg -3'
miRNA:   3'- aCG--CGCCUa-GGCuGGCCGGCgUUAUg -5'
10846 5' -58.2 NC_002794.1 + 83652 0.66 0.867232
Target:  5'- gGCGCGGucaCCGACCuGGucuugaccuaucuCCGCAAg-- -3'
miRNA:   3'- aCGCGCCua-GGCUGG-CC-------------GGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 185443 0.66 0.86359
Target:  5'- aUGCGCGGAcaggucUCCGcgacaaacgccgcggGCggCGGCCGCG--GCg -3'
miRNA:   3'- -ACGCGCCU------AGGC---------------UG--GCCGGCGUuaUG- -5'
10846 5' -58.2 NC_002794.1 + 15114 0.66 0.86064
Target:  5'- cGCGcCGGAgaCCGACCG-CCGUGuucUACg -3'
miRNA:   3'- aCGC-GCCUa-GGCUGGCcGGCGUu--AUG- -5'
10846 5' -58.2 NC_002794.1 + 110639 0.66 0.86064
Target:  5'- gGCgGCGGGgucggguuucUCCGG-CGGCUGCAgacaGUGCa -3'
miRNA:   3'- aCG-CGCCU----------AGGCUgGCCGGCGU----UAUG- -5'
10846 5' -58.2 NC_002794.1 + 138357 0.66 0.86064
Target:  5'- cGCGCGagcGAUCUGcuuguACCGGUCgGCGAUGg -3'
miRNA:   3'- aCGCGC---CUAGGC-----UGGCCGG-CGUUAUg -5'
10846 5' -58.2 NC_002794.1 + 183287 0.66 0.86064
Target:  5'- cGCGCGGAUCgGGCCcGGCgucUGgAAcggGCa -3'
miRNA:   3'- aCGCGCCUAGgCUGG-CCG---GCgUUa--UG- -5'
10846 5' -58.2 NC_002794.1 + 192152 0.66 0.86064
Target:  5'- gGCGCGG-UCgCGGCgGaGCCuGCGGUAg -3'
miRNA:   3'- aCGCGCCuAG-GCUGgC-CGG-CGUUAUg -5'
10846 5' -58.2 NC_002794.1 + 194664 0.66 0.86064
Target:  5'- cUGCGcCGGGUCCcccuCCGGgUGCGAcACc -3'
miRNA:   3'- -ACGC-GCCUAGGcu--GGCCgGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 141663 0.66 0.853132
Target:  5'- cGCcgGCGGGUCgagcgaaGACgGGUCGCcGUACg -3'
miRNA:   3'- aCG--CGCCUAGg------CUGgCCGGCGuUAUG- -5'
10846 5' -58.2 NC_002794.1 + 139445 0.66 0.853132
Target:  5'- cGCGCGcg-CCGAUCGGCagguCGUcGUGCg -3'
miRNA:   3'- aCGCGCcuaGGCUGGCCG----GCGuUAUG- -5'
10846 5' -58.2 NC_002794.1 + 53724 0.66 0.852371
Target:  5'- gGgGUGGAcCCGcgccaucGCCGGCCGCcgcUGCc -3'
miRNA:   3'- aCgCGCCUaGGC-------UGGCCGGCGuu-AUG- -5'
10846 5' -58.2 NC_002794.1 + 91234 0.67 0.845436
Target:  5'- gGCGCGGcggCCGuCgGGCUGCGc--- -3'
miRNA:   3'- aCGCGCCua-GGCuGgCCGGCGUuaug -5'
10846 5' -58.2 NC_002794.1 + 53966 0.67 0.845436
Target:  5'- cGCGCGuccgcUCCGuCCGGCUGCcccGCg -3'
miRNA:   3'- aCGCGCcu---AGGCuGGCCGGCGuuaUG- -5'
10846 5' -58.2 NC_002794.1 + 148134 0.67 0.845436
Target:  5'- gGCGCGGggCCGccggggcgagGgCGGUCGCGAc-- -3'
miRNA:   3'- aCGCGCCuaGGC----------UgGCCGGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 101599 0.67 0.845436
Target:  5'- gGgGCGGGUgCCGGCCcgccgGGCgGgGGUGCc -3'
miRNA:   3'- aCgCGCCUA-GGCUGG-----CCGgCgUUAUG- -5'
10846 5' -58.2 NC_002794.1 + 101040 0.67 0.845436
Target:  5'- gGCGCGGGU-CGGCCGcuaCUGC-GUGCa -3'
miRNA:   3'- aCGCGCCUAgGCUGGCc--GGCGuUAUG- -5'
10846 5' -58.2 NC_002794.1 + 119432 0.67 0.845436
Target:  5'- -uCGCaGGUCCGACggCGGCgGCGGUGg -3'
miRNA:   3'- acGCGcCUAGGCUG--GCCGgCGUUAUg -5'
10846 5' -58.2 NC_002794.1 + 194203 0.67 0.837557
Target:  5'- cGCGUGGuacgacaCCGGCgGGCCGUucaGGUAg -3'
miRNA:   3'- aCGCGCCua-----GGCUGgCCGGCG---UUAUg -5'
10846 5' -58.2 NC_002794.1 + 85942 0.67 0.837557
Target:  5'- gGCuCGGAaCCGACCcggaacggGGCCGCGGc-- -3'
miRNA:   3'- aCGcGCCUaGGCUGG--------CCGGCGUUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.