miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10846 5' -58.2 NC_002794.1 + 747 0.68 0.785951
Target:  5'- cGCGgGGcUCUGccguuuuGCCGGgcCCGCGGUGCa -3'
miRNA:   3'- aCGCgCCuAGGC-------UGGCC--GGCGUUAUG- -5'
10846 5' -58.2 NC_002794.1 + 13142 0.66 0.881979
Target:  5'- cGCGCGGGUCgucGCCGucccauGCCGCAc--- -3'
miRNA:   3'- aCGCGCCUAGgc-UGGC------CGGCGUuaug -5'
10846 5' -58.2 NC_002794.1 + 13728 0.71 0.623543
Target:  5'- cGUGCGGAcccacacgcUcCCGGCCGGCCGaCAc--- -3'
miRNA:   3'- aCGCGCCU---------A-GGCUGGCCGGC-GUuaug -5'
10846 5' -58.2 NC_002794.1 + 13806 0.76 0.337614
Target:  5'- cGCGaCGGGcCCGGCCGGCgGCGAcgGCc -3'
miRNA:   3'- aCGC-GCCUaGGCUGGCCGgCGUUa-UG- -5'
10846 5' -58.2 NC_002794.1 + 14024 0.67 0.829502
Target:  5'- aGUGCuGGUCCuACUGGCUGCug-GCg -3'
miRNA:   3'- aCGCGcCUAGGcUGGCCGGCGuuaUG- -5'
10846 5' -58.2 NC_002794.1 + 14562 0.67 0.821279
Target:  5'- cGCGCGGGaggcgagCCGGCCgaccgaagcgGGCCGUg--GCg -3'
miRNA:   3'- aCGCGCCUa------GGCUGG----------CCGGCGuuaUG- -5'
10846 5' -58.2 NC_002794.1 + 14664 0.69 0.740914
Target:  5'- gGCGUcGGUCCGACucgCGGCgGCGGUcGCg -3'
miRNA:   3'- aCGCGcCUAGGCUG---GCCGgCGUUA-UG- -5'
10846 5' -58.2 NC_002794.1 + 15114 0.66 0.86064
Target:  5'- cGCGcCGGAgaCCGACCG-CCGUGuucUACg -3'
miRNA:   3'- aCGC-GCCUa-GGCUGGCcGGCGUu--AUG- -5'
10846 5' -58.2 NC_002794.1 + 18249 0.76 0.345036
Target:  5'- cGCGCGG--CCGACCGGCgacCGCGAgaUGCg -3'
miRNA:   3'- aCGCGCCuaGGCUGGCCG---GCGUU--AUG- -5'
10846 5' -58.2 NC_002794.1 + 19244 0.69 0.731427
Target:  5'- aGcCGauGAUgugCCGACCGGCCGCGGc-- -3'
miRNA:   3'- aC-GCgcCUA---GGCUGGCCGGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 19884 0.71 0.574132
Target:  5'- cUGCGUGG--CCGACCGcuGCCGCGAg-- -3'
miRNA:   3'- -ACGCGCCuaGGCUGGC--CGGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 23920 0.77 0.309097
Target:  5'- aGCGUGGGcgagcgagcgaUCCGAgcCCGGCCGCGGcGCa -3'
miRNA:   3'- aCGCGCCU-----------AGGCU--GGCCGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 30066 0.68 0.786841
Target:  5'- cGCG-GGGUCCGGucgcCCGGUCGaCGAgGCg -3'
miRNA:   3'- aCGCgCCUAGGCU----GGCCGGC-GUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 32302 0.72 0.544899
Target:  5'- cGcCGCGGcggCCGcGCCGGCCGCGGc-- -3'
miRNA:   3'- aC-GCGCCua-GGC-UGGCCGGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 33148 0.66 0.875069
Target:  5'- cUGCG-GGAcCCGACCGuguuCCGCAAg-- -3'
miRNA:   3'- -ACGCgCCUaGGCUGGCc---GGCGUUaug -5'
10846 5' -58.2 NC_002794.1 + 34757 0.67 0.829502
Target:  5'- gGCGCGGugggaCgCGGCaCGGCCGCcc-GCg -3'
miRNA:   3'- aCGCGCCua---G-GCUG-GCCGGCGuuaUG- -5'
10846 5' -58.2 NC_002794.1 + 36017 0.71 0.623543
Target:  5'- gGCgGCGGAauccgccgUCCGGcCCGGCCGCccgAAUAa -3'
miRNA:   3'- aCG-CGCCU--------AGGCU-GGCCGGCG---UUAUg -5'
10846 5' -58.2 NC_002794.1 + 37734 0.71 0.583962
Target:  5'- aGCgGCGGcgCCG-CCGGCgGCGGcGCg -3'
miRNA:   3'- aCG-CGCCuaGGCuGGCCGgCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 38437 0.69 0.698616
Target:  5'- gGCgGCGGGccggacugaggagCCGGCgCGGCCGCGGcGCg -3'
miRNA:   3'- aCG-CGCCUa------------GGCUG-GCCGGCGUUaUG- -5'
10846 5' -58.2 NC_002794.1 + 40336 0.7 0.682945
Target:  5'- cGCGCGGAcgcgCC-ACCGGCgGCGccGCc -3'
miRNA:   3'- aCGCGCCUa---GGcUGGCCGgCGUuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.