miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10847 3' -66.1 NC_002794.1 + 701 0.66 0.547524
Target:  5'- aGUCGGCUGuuuuugggccucuccGCGACC-CCGgGgGCUCu -3'
miRNA:   3'- -CGGCCGACc--------------CGCUGGcGGCgCgCGAG- -5'
10847 3' -66.1 NC_002794.1 + 110334 0.66 0.546605
Target:  5'- cGCCGcGCgGGGgGucuCCGCCGUG-GCg- -3'
miRNA:   3'- -CGGC-CGaCCCgCu--GGCGGCGCgCGag -5'
10847 3' -66.1 NC_002794.1 + 70858 0.66 0.546605
Target:  5'- uGCCGGCcuccuccgGcGGCGGCaGCgGCG-GCUCc -3'
miRNA:   3'- -CGGCCGa-------C-CCGCUGgCGgCGCgCGAG- -5'
10847 3' -66.1 NC_002794.1 + 105905 0.66 0.546605
Target:  5'- cGCCgcGGCgGcGGCGcuACCGCCGC-CGC-Cg -3'
miRNA:   3'- -CGG--CCGaC-CCGC--UGGCGGCGcGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 67415 0.66 0.546605
Target:  5'- cGUCGGCgccagcgucGGCGGCgUGUCGCGcCGCUUc -3'
miRNA:   3'- -CGGCCGac-------CCGCUG-GCGGCGC-GCGAG- -5'
10847 3' -66.1 NC_002794.1 + 15116 0.66 0.545687
Target:  5'- cGCCGGagac-CGACCGCCGUGUucuacgugaauucGCUCg -3'
miRNA:   3'- -CGGCCgacccGCUGGCGGCGCG-------------CGAG- -5'
10847 3' -66.1 NC_002794.1 + 71802 0.66 0.545687
Target:  5'- cCCGGC-GGGCGcggcgagGCCGCCuCGuCGCg- -3'
miRNA:   3'- cGGCCGaCCCGC-------UGGCGGcGC-GCGag -5'
10847 3' -66.1 NC_002794.1 + 145936 0.66 0.544769
Target:  5'- gGCCGGCgagagcgguucgGGagucGCGAgCGCCcaGCGCGCcCa -3'
miRNA:   3'- -CGGCCGa-----------CC----CGCUgGCGG--CGCGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 12025 0.66 0.541103
Target:  5'- cGCCGGCccGGGCGuccgcgccuuccccuGCCgguaucucuggGCCGCGcCGC-Cg -3'
miRNA:   3'- -CGGCCGa-CCCGC---------------UGG-----------CGGCGC-GCGaG- -5'
10847 3' -66.1 NC_002794.1 + 62694 0.66 0.537446
Target:  5'- uGCa-GCUGugucGGCGGCCGCCGaCGCGa-- -3'
miRNA:   3'- -CGgcCGAC----CCGCUGGCGGC-GCGCgag -5'
10847 3' -66.1 NC_002794.1 + 72436 0.66 0.537446
Target:  5'- aGCCGGCggaGGGacCGGCggCGCCcCGCGCcCg -3'
miRNA:   3'- -CGGCCGa--CCC--GCUG--GCGGcGCGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 112221 0.66 0.537446
Target:  5'- gGCCcGCUccaGGGCGuccaggGCCGCCGCGaaCGC-Cg -3'
miRNA:   3'- -CGGcCGA---CCCGC------UGGCGGCGC--GCGaG- -5'
10847 3' -66.1 NC_002794.1 + 68499 0.66 0.537446
Target:  5'- aGCCGGCcgugcGGGUGAuCUGCCa-GCGaCUCu -3'
miRNA:   3'- -CGGCCGa----CCCGCU-GGCGGcgCGC-GAG- -5'
10847 3' -66.1 NC_002794.1 + 137371 0.66 0.537446
Target:  5'- uUCGaGCcGGGCGAgCGCCGaCGCGg-- -3'
miRNA:   3'- cGGC-CGaCCCGCUgGCGGC-GCGCgag -5'
10847 3' -66.1 NC_002794.1 + 149278 0.66 0.537446
Target:  5'- cGCCGGC--GGCG-CgGCgGCuCGCUCa -3'
miRNA:   3'- -CGGCCGacCCGCuGgCGgCGcGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 58015 0.66 0.535621
Target:  5'- cGCCGGggccgccgccGGCGAacCCGCCGCGcCGCcCg -3'
miRNA:   3'- -CGGCCgac-------CCGCU--GGCGGCGC-GCGaG- -5'
10847 3' -66.1 NC_002794.1 + 190157 0.66 0.534708
Target:  5'- uGCUGGC--GGCGGcucuccucgaacacCCGCCGCgccaccuccacGCGCUCc -3'
miRNA:   3'- -CGGCCGacCCGCU--------------GGCGGCG-----------CGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 184021 0.66 0.528341
Target:  5'- cGCCGGCcgccacGGC-ACCGCgCGCaGCGCg- -3'
miRNA:   3'- -CGGCCGac----CCGcUGGCG-GCG-CGCGag -5'
10847 3' -66.1 NC_002794.1 + 40494 0.66 0.528341
Target:  5'- gGCCGGCgcucGCcgcucgagucacGGCCGCCGaCGCGC-Cg -3'
miRNA:   3'- -CGGCCGacc-CG------------CUGGCGGC-GCGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 192382 0.66 0.528341
Target:  5'- cGCgGGCUGaccGCcACCGCCGCGC-Cg- -3'
miRNA:   3'- -CGgCCGACc--CGcUGGCGGCGCGcGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.