miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10847 3' -66.1 NC_002794.1 + 47963 1.09 0.000508
Target:  5'- cGCCGGCUGGGCGACCGCCGCGCGCUCc -3'
miRNA:   3'- -CGGCCGACCCGCUGGCGGCGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 147005 0.84 0.035049
Target:  5'- cGUCGGCgGcGGCGGCCGCCG-GCGCUCg -3'
miRNA:   3'- -CGGCCGaC-CCGCUGGCGGCgCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 34716 0.81 0.058966
Target:  5'- cGCCGGCgccacgaggcgcGGGCGGCCGCagaGCGCGCg- -3'
miRNA:   3'- -CGGCCGa-----------CCCGCUGGCGg--CGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 192617 0.78 0.087276
Target:  5'- cGCCaGGUgcggacagucGGGCGgccgcuccagccgcGCCGCCGCGCGCUCg -3'
miRNA:   3'- -CGG-CCGa---------CCCGC--------------UGGCGGCGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 101805 0.77 0.109419
Target:  5'- cGCUGGUUGGcgcaGCGGCgCGCCGUGCGCg- -3'
miRNA:   3'- -CGGCCGACC----CGCUG-GCGGCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 18647 0.77 0.117622
Target:  5'- cGCCGGCacccGGGaCGACCGUCGC-CGCUUc -3'
miRNA:   3'- -CGGCCGa---CCC-GCUGGCGGCGcGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 111616 0.76 0.123406
Target:  5'- gGCCGGCgGGGCcgccgcGGCCGCCGC-CGgUCg -3'
miRNA:   3'- -CGGCCGaCCCG------CUGGCGGCGcGCgAG- -5'
10847 3' -66.1 NC_002794.1 + 116802 0.76 0.135772
Target:  5'- aGCCGGCUcGGGCG-CCGuaGCGCgggucGCUCu -3'
miRNA:   3'- -CGGCCGA-CCCGCuGGCggCGCG-----CGAG- -5'
10847 3' -66.1 NC_002794.1 + 118280 0.75 0.142374
Target:  5'- cGCCGGCgucGGG-GACCGCgccgggCGCGuCGCUCg -3'
miRNA:   3'- -CGGCCGa--CCCgCUGGCG------GCGC-GCGAG- -5'
10847 3' -66.1 NC_002794.1 + 126277 0.75 0.142374
Target:  5'- gGCgGcGCUGGGCuugcuGugCGCCGCGCGCc- -3'
miRNA:   3'- -CGgC-CGACCCG-----CugGCGGCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 37765 0.75 0.149269
Target:  5'- cGCCGGCgGGaGCGGCCGUCGUcgucggccgcagGCGcCUCg -3'
miRNA:   3'- -CGGCCGaCC-CGCUGGCGGCG------------CGC-GAG- -5'
10847 3' -66.1 NC_002794.1 + 96730 0.75 0.149269
Target:  5'- aGCCGGCga--CGACCGCCGgCGCGuCUCg -3'
miRNA:   3'- -CGGCCGacccGCUGGCGGC-GCGC-GAG- -5'
10847 3' -66.1 NC_002794.1 + 105417 0.75 0.156466
Target:  5'- cUCGGCcuccaGGGUGGCCGCCGCcGCGC-Cg -3'
miRNA:   3'- cGGCCGa----CCCGCUGGCGGCG-CGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 31331 0.74 0.163975
Target:  5'- cGUCGGCUcGGCGcCCGCCGUGUccgccgcccGCUCg -3'
miRNA:   3'- -CGGCCGAcCCGCuGGCGGCGCG---------CGAG- -5'
10847 3' -66.1 NC_002794.1 + 38457 0.74 0.16785
Target:  5'- aGCCGGC---GCGGCCGCgGCGCGCc- -3'
miRNA:   3'- -CGGCCGaccCGCUGGCGgCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 58072 0.74 0.179972
Target:  5'- cGgCGGCgggacGGGCGGCCcggcGCC-CGCGCUCg -3'
miRNA:   3'- -CgGCCGa----CCCGCUGG----CGGcGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 186297 0.74 0.179972
Target:  5'- gGCCaGGCggccGGUcGCCGCgGCGCGCUCg -3'
miRNA:   3'- -CGG-CCGac--CCGcUGGCGgCGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 117221 0.74 0.184181
Target:  5'- uCCGGCcgcgucaGGGCGACCGaCGCGUGCa- -3'
miRNA:   3'- cGGCCGa------CCCGCUGGCgGCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 182993 0.74 0.184181
Target:  5'- gGCCGGCgcuucgccgcGGGCG-CC-CCGCGCGCg- -3'
miRNA:   3'- -CGGCCGa---------CCCGCuGGcGGCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 33441 0.73 0.2019
Target:  5'- cCCGGUgcaggaccucGGGCGGCCGCCGgaCGCGCcCa -3'
miRNA:   3'- cGGCCGa---------CCCGCUGGCGGC--GCGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.