miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10847 3' -66.1 NC_002794.1 + 701 0.66 0.547524
Target:  5'- aGUCGGCUGuuuuugggccucuccGCGACC-CCGgGgGCUCu -3'
miRNA:   3'- -CGGCCGACc--------------CGCUGGcGGCgCgCGAG- -5'
10847 3' -66.1 NC_002794.1 + 1434 0.7 0.300641
Target:  5'- aCCGGgaGGGgGACCGggGCGCGUUUu -3'
miRNA:   3'- cGGCCgaCCCgCUGGCggCGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 2086 0.71 0.275862
Target:  5'- cGCCGGCcuuauacGGCGACCGggGCGUGUUCu -3'
miRNA:   3'- -CGGCCGac-----CCGCUGGCggCGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 3729 0.68 0.416489
Target:  5'- -aCGGUUGGgacaucGCGACCGCaaCGCGCGUc- -3'
miRNA:   3'- cgGCCGACC------CGCUGGCG--GCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 9117 0.7 0.320329
Target:  5'- aGCagugaGGCcGGGCGACgaaCCGCGCGCg- -3'
miRNA:   3'- -CGg----CCGaCCCGCUGgc-GGCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 12025 0.66 0.541103
Target:  5'- cGCCGGCccGGGCGuccgcgccuuccccuGCCgguaucucuggGCCGCGcCGC-Cg -3'
miRNA:   3'- -CGGCCGa-CCCGC---------------UGG-----------CGGCGC-GCGaG- -5'
10847 3' -66.1 NC_002794.1 + 12234 0.68 0.400581
Target:  5'- cGCCGGC--GGCG-CCGuCCGCgGCGC-Cg -3'
miRNA:   3'- -CGGCCGacCCGCuGGC-GGCG-CGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 12520 0.71 0.258369
Target:  5'- cGgCGGCUGGGUGGauuggaaggaaCGCgGCGCGCa- -3'
miRNA:   3'- -CgGCCGACCCGCUg----------GCGgCGCGCGag -5'
10847 3' -66.1 NC_002794.1 + 13115 0.69 0.340968
Target:  5'- uUCGGCgGGGU---CGCCGCGCgGCUCg -3'
miRNA:   3'- cGGCCGaCCCGcugGCGGCGCG-CGAG- -5'
10847 3' -66.1 NC_002794.1 + 13261 0.68 0.390451
Target:  5'- cGCCgGGCuguggUGGaGCGGCCGCUGUugacggcggcauggGCGCUUc -3'
miRNA:   3'- -CGG-CCG-----ACC-CGCUGGCGGCG--------------CGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 14479 0.72 0.231242
Target:  5'- cGCCGcGCUcgcuguucGcGGCGGCgGCC-CGCGCUCg -3'
miRNA:   3'- -CGGC-CGA--------C-CCGCUGgCGGcGCGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 14652 0.68 0.406898
Target:  5'- cGCCGGCgccgcggcgucgGuccgacucgcGGCGGCgGUCGCGCuGCUCc -3'
miRNA:   3'- -CGGCCGa-----------C----------CCGCUGgCGGCGCG-CGAG- -5'
10847 3' -66.1 NC_002794.1 + 15116 0.66 0.545687
Target:  5'- cGCCGGagac-CGACCGCCGUGUucuacgugaauucGCUCg -3'
miRNA:   3'- -CGGCCgacccGCUGGCGGCGCG-------------CGAG- -5'
10847 3' -66.1 NC_002794.1 + 17136 0.67 0.492535
Target:  5'- aGCCGGCgaaacGGCGGuagCGcCCGUGaCGCUCu -3'
miRNA:   3'- -CGGCCGac---CCGCUg--GC-GGCGC-GCGAG- -5'
10847 3' -66.1 NC_002794.1 + 17265 0.66 0.528341
Target:  5'- cCCGGCUcgucacccGGGCacGCCGCCGcCGaCGgUCa -3'
miRNA:   3'- cGGCCGA--------CCCGc-UGGCGGC-GC-GCgAG- -5'
10847 3' -66.1 NC_002794.1 + 17932 0.68 0.424586
Target:  5'- gGCCGGCUccccgaccuGGCGGCCaCC-CGCGaCUCg -3'
miRNA:   3'- -CGGCCGAc--------CCGCUGGcGGcGCGC-GAG- -5'
10847 3' -66.1 NC_002794.1 + 18647 0.77 0.117622
Target:  5'- cGCCGGCacccGGGaCGACCGUCGC-CGCUUc -3'
miRNA:   3'- -CGGCCGa---CCC-GCUGGCGGCGcGCGAG- -5'
10847 3' -66.1 NC_002794.1 + 18806 0.67 0.441058
Target:  5'- cGCCGGCcaacgggucGGCGACCucgGCCG-GCGCg- -3'
miRNA:   3'- -CGGCCGac-------CCGCUGG---CGGCgCGCGag -5'
10847 3' -66.1 NC_002794.1 + 19323 0.68 0.392774
Target:  5'- cGCCGcGCUGG-CGAC--CCGCGCGC-Cg -3'
miRNA:   3'- -CGGC-CGACCcGCUGgcGGCGCGCGaG- -5'
10847 3' -66.1 NC_002794.1 + 19529 0.67 0.483756
Target:  5'- cGCCGGCgcGGcGCGGcCCGCCG-GUGUc- -3'
miRNA:   3'- -CGGCCGa-CC-CGCU-GGCGGCgCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.