miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10847 5' -55.2 NC_002794.1 + 112935 0.66 0.953848
Target:  5'- uCGAGCuUGUGGUGGUUG---AGCAGg -3'
miRNA:   3'- uGCUCGcACGUCACCAGCaugUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 127969 0.66 0.949394
Target:  5'- uACGAGCGacccuggUGguGUGGUgGUGucugGGCGGa -3'
miRNA:   3'- -UGCUCGC-------ACguCACCAgCAUg---UCGUC- -5'
10847 5' -55.2 NC_002794.1 + 140081 0.66 0.945544
Target:  5'- cGCGAGCcaGCAGgacguccaUGGUCGgcggcgaucgACGGCGGu -3'
miRNA:   3'- -UGCUCGcaCGUC--------ACCAGCa---------UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 192966 0.66 0.942873
Target:  5'- gACGAGcCGUGCAGgaccagggcgcGGUCGcccucgcccggcgugUGCAGCGc -3'
miRNA:   3'- -UGCUC-GCACGUCa----------CCAGC---------------AUGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 117973 0.66 0.941047
Target:  5'- -aGGGCcacCAGcUGGUgGUACAGCAGg -3'
miRNA:   3'- ugCUCGcacGUC-ACCAgCAUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 101640 0.66 0.941047
Target:  5'- cGCGAGCGUG-GGcGGgCGgGCGGCGGu -3'
miRNA:   3'- -UGCUCGCACgUCaCCaGCaUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 143018 0.67 0.936316
Target:  5'- --cAGCGUGCGGUcggccgGGUCG-ACGuGCAGg -3'
miRNA:   3'- ugcUCGCACGUCA------CCAGCaUGU-CGUC- -5'
10847 5' -55.2 NC_002794.1 + 95835 0.67 0.936316
Target:  5'- -gGAGCGgcgGCGGcGGcCGgggagGCGGCGGg -3'
miRNA:   3'- ugCUCGCa--CGUCaCCaGCa----UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 55276 0.67 0.936316
Target:  5'- -gGGGCG-GCGGUGG-CGgcgacgaggGCGGCGGc -3'
miRNA:   3'- ugCUCGCaCGUCACCaGCa--------UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 182459 0.67 0.926147
Target:  5'- -aGAGCGcgGCGGUGcGcggCGU-CAGCAGa -3'
miRNA:   3'- ugCUCGCa-CGUCAC-Ca--GCAuGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 154964 0.67 0.926147
Target:  5'- gACGAaguGCG-GCAG-GGUCGguaGCAGCGu -3'
miRNA:   3'- -UGCU---CGCaCGUCaCCAGCa--UGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 88965 0.67 0.915035
Target:  5'- uACGAGCGUgGCcGccGGaUCGUcGCGGCAGa -3'
miRNA:   3'- -UGCUCGCA-CGuCa-CC-AGCA-UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 32872 0.67 0.915035
Target:  5'- gGCGGGCG-GCGGcGG-CGgcgGCGGCAu -3'
miRNA:   3'- -UGCUCGCaCGUCaCCaGCa--UGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 142192 0.67 0.909127
Target:  5'- -gGAGCG-GCAGUGcGggaagCGgcgGCGGCAGc -3'
miRNA:   3'- ugCUCGCaCGUCAC-Ca----GCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 44533 0.68 0.902986
Target:  5'- cGCGAGCGcGCcGUcGUCGUcgccgGCGGCGGc -3'
miRNA:   3'- -UGCUCGCaCGuCAcCAGCA-----UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 21658 0.68 0.896614
Target:  5'- aGCG-GCG-GCGGUGG-CG-GCGGCGGu -3'
miRNA:   3'- -UGCuCGCaCGUCACCaGCaUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 189306 0.68 0.876148
Target:  5'- gUGGuCGUGCAGUucgggcagcuGGUCGggggGCAGCAGc -3'
miRNA:   3'- uGCUcGCACGUCA----------CCAGCa---UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 94046 0.69 0.86889
Target:  5'- -aGAGCG-GCGGcGGUgCGgggGCGGCGGg -3'
miRNA:   3'- ugCUCGCaCGUCaCCA-GCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 29818 0.69 0.861421
Target:  5'- aGCGAucuGUGaGCAGguccggGGUCGUGCAGgGGg -3'
miRNA:   3'- -UGCU---CGCaCGUCa-----CCAGCAUGUCgUC- -5'
10847 5' -55.2 NC_002794.1 + 179973 0.69 0.859903
Target:  5'- -gGAGCGgcaggagccaagGCGGUGGcCGcgACGGCGGg -3'
miRNA:   3'- ugCUCGCa-----------CGUCACCaGCa-UGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.