miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10847 5' -55.2 NC_002794.1 + 47999 1.08 0.005168
Target:  5'- gACGAGCGUGCAGUGGUCGUACAGCAGc -3'
miRNA:   3'- -UGCUCGCACGUCACCAGCAUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 37881 0.73 0.628472
Target:  5'- uCGGGCGgcggggGCGGUGG-CGgcgGCAGCGGc -3'
miRNA:   3'- uGCUCGCa-----CGUCACCaGCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 131016 0.73 0.648807
Target:  5'- cACGGGU---CGGUGGUCGUGCGGCGc -3'
miRNA:   3'- -UGCUCGcacGUCACCAGCAUGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 109171 0.72 0.689254
Target:  5'- gACGAGCG-GCGGUagcGG-CGgagGCAGCGGg -3'
miRNA:   3'- -UGCUCGCaCGUCA---CCaGCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 119963 0.72 0.69927
Target:  5'- uCGAGCGUGCucuGGUGGuUCG-ACgAGCGGa -3'
miRNA:   3'- uGCUCGCACG---UCACC-AGCaUG-UCGUC- -5'
10847 5' -55.2 NC_002794.1 + 119137 0.71 0.738688
Target:  5'- gGCaGGCGUucgGGUGGUCGcGCAGCAGg -3'
miRNA:   3'- -UGcUCGCAcg-UCACCAGCaUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 136613 0.7 0.794884
Target:  5'- -aGAGCGUguGCAGgugGGUCugGCAGCGGc -3'
miRNA:   3'- ugCUCGCA--CGUCa--CCAGcaUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 45433 0.7 0.794884
Target:  5'- cGCGAGCGUcucGCGGacccGGUCGcgcguCAGCGGg -3'
miRNA:   3'- -UGCUCGCA---CGUCa---CCAGCau---GUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 100094 0.69 0.829568
Target:  5'- cACGuccGCGUGCGGcg--CGUGCAGCGGu -3'
miRNA:   3'- -UGCu--CGCACGUCaccaGCAUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 65926 0.69 0.837815
Target:  5'- cGCcGGCG-GCGGUGG-CGUcgGCGGCGGu -3'
miRNA:   3'- -UGcUCGCaCGUCACCaGCA--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 142467 0.69 0.845877
Target:  5'- gAUGAGCGccgGCAccGUGGacgCGUGCGGCGc -3'
miRNA:   3'- -UGCUCGCa--CGU--CACCa--GCAUGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 179973 0.69 0.859903
Target:  5'- -gGAGCGgcaggagccaagGCGGUGGcCGcgACGGCGGg -3'
miRNA:   3'- ugCUCGCa-----------CGUCACCaGCa-UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 29818 0.69 0.861421
Target:  5'- aGCGAucuGUGaGCAGguccggGGUCGUGCAGgGGg -3'
miRNA:   3'- -UGCU---CGCaCGUCa-----CCAGCAUGUCgUC- -5'
10847 5' -55.2 NC_002794.1 + 94046 0.69 0.86889
Target:  5'- -aGAGCG-GCGGcGGUgCGgggGCGGCGGg -3'
miRNA:   3'- ugCUCGCaCGUCaCCA-GCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 189306 0.68 0.876148
Target:  5'- gUGGuCGUGCAGUucgggcagcuGGUCGggggGCAGCAGc -3'
miRNA:   3'- uGCUcGCACGUCA----------CCAGCa---UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 21658 0.68 0.896614
Target:  5'- aGCG-GCG-GCGGUGG-CG-GCGGCGGu -3'
miRNA:   3'- -UGCuCGCaCGUCACCaGCaUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 44533 0.68 0.902986
Target:  5'- cGCGAGCGcGCcGUcGUCGUcgccgGCGGCGGc -3'
miRNA:   3'- -UGCUCGCaCGuCAcCAGCA-----UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 142192 0.67 0.909127
Target:  5'- -gGAGCG-GCAGUGcGggaagCGgcgGCGGCAGc -3'
miRNA:   3'- ugCUCGCaCGUCAC-Ca----GCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 88965 0.67 0.915035
Target:  5'- uACGAGCGUgGCcGccGGaUCGUcGCGGCAGa -3'
miRNA:   3'- -UGCUCGCA-CGuCa-CC-AGCA-UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 32872 0.67 0.915035
Target:  5'- gGCGGGCG-GCGGcGG-CGgcgGCGGCAu -3'
miRNA:   3'- -UGCUCGCaCGUCaCCaGCa--UGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.