Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10847 | 5' | -55.2 | NC_002794.1 | + | 21658 | 0.68 | 0.896614 |
Target: 5'- aGCG-GCG-GCGGUGG-CG-GCGGCGGu -3' miRNA: 3'- -UGCuCGCaCGUCACCaGCaUGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 29818 | 0.69 | 0.861421 |
Target: 5'- aGCGAucuGUGaGCAGguccggGGUCGUGCAGgGGg -3' miRNA: 3'- -UGCU---CGCaCGUCa-----CCAGCAUGUCgUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 32872 | 0.67 | 0.915035 |
Target: 5'- gGCGGGCG-GCGGcGG-CGgcgGCGGCAu -3' miRNA: 3'- -UGCUCGCaCGUCaCCaGCa--UGUCGUc -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 37881 | 0.73 | 0.628472 |
Target: 5'- uCGGGCGgcggggGCGGUGG-CGgcgGCAGCGGc -3' miRNA: 3'- uGCUCGCa-----CGUCACCaGCa--UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 44533 | 0.68 | 0.902986 |
Target: 5'- cGCGAGCGcGCcGUcGUCGUcgccgGCGGCGGc -3' miRNA: 3'- -UGCUCGCaCGuCAcCAGCA-----UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 45433 | 0.7 | 0.794884 |
Target: 5'- cGCGAGCGUcucGCGGacccGGUCGcgcguCAGCGGg -3' miRNA: 3'- -UGCUCGCA---CGUCa---CCAGCau---GUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 47999 | 1.08 | 0.005168 |
Target: 5'- gACGAGCGUGCAGUGGUCGUACAGCAGc -3' miRNA: 3'- -UGCUCGCACGUCACCAGCAUGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 55276 | 0.67 | 0.936316 |
Target: 5'- -gGGGCG-GCGGUGG-CGgcgacgaggGCGGCGGc -3' miRNA: 3'- ugCUCGCaCGUCACCaGCa--------UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 65926 | 0.69 | 0.837815 |
Target: 5'- cGCcGGCG-GCGGUGG-CGUcgGCGGCGGu -3' miRNA: 3'- -UGcUCGCaCGUCACCaGCA--UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 88965 | 0.67 | 0.915035 |
Target: 5'- uACGAGCGUgGCcGccGGaUCGUcGCGGCAGa -3' miRNA: 3'- -UGCUCGCA-CGuCa-CC-AGCA-UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 94046 | 0.69 | 0.86889 |
Target: 5'- -aGAGCG-GCGGcGGUgCGgggGCGGCGGg -3' miRNA: 3'- ugCUCGCaCGUCaCCA-GCa--UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 95835 | 0.67 | 0.936316 |
Target: 5'- -gGAGCGgcgGCGGcGGcCGgggagGCGGCGGg -3' miRNA: 3'- ugCUCGCa--CGUCaCCaGCa----UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 100094 | 0.69 | 0.829568 |
Target: 5'- cACGuccGCGUGCGGcg--CGUGCAGCGGu -3' miRNA: 3'- -UGCu--CGCACGUCaccaGCAUGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 101640 | 0.66 | 0.941047 |
Target: 5'- cGCGAGCGUG-GGcGGgCGgGCGGCGGu -3' miRNA: 3'- -UGCUCGCACgUCaCCaGCaUGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 109171 | 0.72 | 0.689254 |
Target: 5'- gACGAGCG-GCGGUagcGG-CGgagGCAGCGGg -3' miRNA: 3'- -UGCUCGCaCGUCA---CCaGCa--UGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 112935 | 0.66 | 0.953848 |
Target: 5'- uCGAGCuUGUGGUGGUUG---AGCAGg -3' miRNA: 3'- uGCUCGcACGUCACCAGCaugUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 117973 | 0.66 | 0.941047 |
Target: 5'- -aGGGCcacCAGcUGGUgGUACAGCAGg -3' miRNA: 3'- ugCUCGcacGUC-ACCAgCAUGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 119137 | 0.71 | 0.738688 |
Target: 5'- gGCaGGCGUucgGGUGGUCGcGCAGCAGg -3' miRNA: 3'- -UGcUCGCAcg-UCACCAGCaUGUCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 119963 | 0.72 | 0.69927 |
Target: 5'- uCGAGCGUGCucuGGUGGuUCG-ACgAGCGGa -3' miRNA: 3'- uGCUCGCACG---UCACC-AGCaUG-UCGUC- -5' |
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10847 | 5' | -55.2 | NC_002794.1 | + | 127969 | 0.66 | 0.949394 |
Target: 5'- uACGAGCGacccuggUGguGUGGUgGUGucugGGCGGa -3' miRNA: 3'- -UGCUCGC-------ACguCACCAgCAUg---UCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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