miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10847 5' -55.2 NC_002794.1 + 131016 0.73 0.648807
Target:  5'- cACGGGU---CGGUGGUCGUGCGGCGc -3'
miRNA:   3'- -UGCUCGcacGUCACCAGCAUGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 136613 0.7 0.794884
Target:  5'- -aGAGCGUguGCAGgugGGUCugGCAGCGGc -3'
miRNA:   3'- ugCUCGCA--CGUCa--CCAGcaUGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 140081 0.66 0.945544
Target:  5'- cGCGAGCcaGCAGgacguccaUGGUCGgcggcgaucgACGGCGGu -3'
miRNA:   3'- -UGCUCGcaCGUC--------ACCAGCa---------UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 142192 0.67 0.909127
Target:  5'- -gGAGCG-GCAGUGcGggaagCGgcgGCGGCAGc -3'
miRNA:   3'- ugCUCGCaCGUCAC-Ca----GCa--UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 142467 0.69 0.845877
Target:  5'- gAUGAGCGccgGCAccGUGGacgCGUGCGGCGc -3'
miRNA:   3'- -UGCUCGCa--CGU--CACCa--GCAUGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 143018 0.67 0.936316
Target:  5'- --cAGCGUGCGGUcggccgGGUCG-ACGuGCAGg -3'
miRNA:   3'- ugcUCGCACGUCA------CCAGCaUGU-CGUC- -5'
10847 5' -55.2 NC_002794.1 + 154964 0.67 0.926147
Target:  5'- gACGAaguGCG-GCAG-GGUCGguaGCAGCGu -3'
miRNA:   3'- -UGCU---CGCaCGUCaCCAGCa--UGUCGUc -5'
10847 5' -55.2 NC_002794.1 + 179973 0.69 0.859903
Target:  5'- -gGAGCGgcaggagccaagGCGGUGGcCGcgACGGCGGg -3'
miRNA:   3'- ugCUCGCa-----------CGUCACCaGCa-UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 182459 0.67 0.926147
Target:  5'- -aGAGCGcgGCGGUGcGcggCGU-CAGCAGa -3'
miRNA:   3'- ugCUCGCa-CGUCAC-Ca--GCAuGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 189306 0.68 0.876148
Target:  5'- gUGGuCGUGCAGUucgggcagcuGGUCGggggGCAGCAGc -3'
miRNA:   3'- uGCUcGCACGUCA----------CCAGCa---UGUCGUC- -5'
10847 5' -55.2 NC_002794.1 + 192966 0.66 0.942873
Target:  5'- gACGAGcCGUGCAGgaccagggcgcGGUCGcccucgcccggcgugUGCAGCGc -3'
miRNA:   3'- -UGCUC-GCACGUCa----------CCAGC---------------AUGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.