miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 34053 0.65 0.70296
Target:  5'- --gGcCGGcCCgCGCACGACCCGccguucccgccggcGGCCg -3'
miRNA:   3'- cagC-GCCaGG-GCGUGCUGGGU--------------CCGGg -5'
10848 5' -63.2 NC_002794.1 + 19512 0.65 0.702026
Target:  5'- gGUCGCGccgcucggagcgCCgGCGCGGCgC-GGCCCg -3'
miRNA:   3'- -CAGCGCca----------GGgCGUGCUGgGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 186450 0.66 0.696414
Target:  5'- -gCGCaGGUCuuGCugGuucagccgacGCCCucgcuccuggaGGGCCCg -3'
miRNA:   3'- caGCG-CCAGggCGugC----------UGGG-----------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 56169 0.66 0.696414
Target:  5'- --aGCGGcCCCgguGCACGuagaGCaCCGGGCCg -3'
miRNA:   3'- cagCGCCaGGG---CGUGC----UG-GGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 36229 0.66 0.696414
Target:  5'- -cCGCaGG-CCCGguCGAUaUAGGCCCc -3'
miRNA:   3'- caGCG-CCaGGGCguGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 90913 0.66 0.696414
Target:  5'- aUCGU-GUCCCGCACGGaggaCCAcGGCg- -3'
miRNA:   3'- cAGCGcCAGGGCGUGCUg---GGU-CCGgg -5'
10848 5' -63.2 NC_002794.1 + 74684 0.66 0.696414
Target:  5'- -aCGCGGa-CCGaacucaucCACGACCCGGGCa- -3'
miRNA:   3'- caGCGCCagGGC--------GUGCUGGGUCCGgg -5'
10848 5' -63.2 NC_002794.1 + 151585 0.66 0.687025
Target:  5'- --gGCGG-CgCGCGCcgccGCCgCGGGCCCg -3'
miRNA:   3'- cagCGCCaGgGCGUGc---UGG-GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 130276 0.66 0.687025
Target:  5'- --aGCGGUUgagccgCCGCuCGcuCCCGGGUCCg -3'
miRNA:   3'- cagCGCCAG------GGCGuGCu-GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 78195 0.66 0.687025
Target:  5'- -cCGUacGGUCCuuucCGCACGGuccUCCGGGCCg -3'
miRNA:   3'- caGCG--CCAGG----GCGUGCU---GGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 33499 0.66 0.687025
Target:  5'- -aUGCaGaagCUGCugGACCCGGGCCa -3'
miRNA:   3'- caGCGcCag-GGCGugCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 54924 0.66 0.687025
Target:  5'- -aCGCGcagcGUCCgcaGCGCGACCguGGUCa -3'
miRNA:   3'- caGCGC----CAGGg--CGUGCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 70054 0.66 0.687025
Target:  5'- gGUCGCccGGUCgggcggCCGCagccgcagcaagGCGACgCAGGCCg -3'
miRNA:   3'- -CAGCG--CCAG------GGCG------------UGCUGgGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 111659 0.66 0.687025
Target:  5'- -cCGCGGccacgCCCGUcggauACGGucgUCCAGGCCg -3'
miRNA:   3'- caGCGCCa----GGGCG-----UGCU---GGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 19424 0.66 0.687025
Target:  5'- -gCGCGcccUCCUcCGCGA-CCAGGCCCc -3'
miRNA:   3'- caGCGCc--AGGGcGUGCUgGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 134822 0.66 0.677596
Target:  5'- -cCGauCGGUCCagcgacaGCgACGAagaaCCGGGCCCg -3'
miRNA:   3'- caGC--GCCAGGg------CG-UGCUg---GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 193775 0.66 0.677596
Target:  5'- cUCGCucgCCCGCucgaucgcccgACGACgCCGGcGCCCg -3'
miRNA:   3'- cAGCGccaGGGCG-----------UGCUG-GGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 194015 0.66 0.677596
Target:  5'- uUCGCGGcCgCCGCcgcCGGCgCCucGCCCg -3'
miRNA:   3'- cAGCGCCaG-GGCGu--GCUG-GGucCGGG- -5'
10848 5' -63.2 NC_002794.1 + 151097 0.66 0.668134
Target:  5'- -cCGCGGUucaCCUGCGaGACCUucugGGaGCCCg -3'
miRNA:   3'- caGCGCCA---GGGCGUgCUGGG----UC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 181905 0.66 0.668134
Target:  5'- -gCGCGGgucguacaccaCCCGCGCGAcggccgucuCCCGGGagCCg -3'
miRNA:   3'- caGCGCCa----------GGGCGUGCU---------GGGUCCg-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.