Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10848 | 5' | -63.2 | NC_002794.1 | + | 34053 | 0.65 | 0.70296 |
Target: 5'- --gGcCGGcCCgCGCACGACCCGccguucccgccggcGGCCg -3' miRNA: 3'- cagC-GCCaGG-GCGUGCUGGGU--------------CCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 19512 | 0.65 | 0.702026 |
Target: 5'- gGUCGCGccgcucggagcgCCgGCGCGGCgC-GGCCCg -3' miRNA: 3'- -CAGCGCca----------GGgCGUGCUGgGuCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 194015 | 0.66 | 0.677596 |
Target: 5'- uUCGCGGcCgCCGCcgcCGGCgCCucGCCCg -3' miRNA: 3'- cAGCGCCaG-GGCGu--GCUG-GGucCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 78195 | 0.66 | 0.687025 |
Target: 5'- -cCGUacGGUCCuuucCGCACGGuccUCCGGGCCg -3' miRNA: 3'- caGCG--CCAGG----GCGUGCU---GGGUCCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 130276 | 0.66 | 0.687025 |
Target: 5'- --aGCGGUUgagccgCCGCuCGcuCCCGGGUCCg -3' miRNA: 3'- cagCGCCAG------GGCGuGCu-GGGUCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 151585 | 0.66 | 0.687025 |
Target: 5'- --gGCGG-CgCGCGCcgccGCCgCGGGCCCg -3' miRNA: 3'- cagCGCCaGgGCGUGc---UGG-GUCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 193775 | 0.66 | 0.677596 |
Target: 5'- cUCGCucgCCCGCucgaucgcccgACGACgCCGGcGCCCg -3' miRNA: 3'- cAGCGccaGGGCG-----------UGCUG-GGUC-CGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 134822 | 0.66 | 0.677596 |
Target: 5'- -cCGauCGGUCCagcgacaGCgACGAagaaCCGGGCCCg -3' miRNA: 3'- caGC--GCCAGGg------CG-UGCUg---GGUCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 41245 | 0.66 | 0.668134 |
Target: 5'- -cCGCGG--CCGC-CGACgCCGgcGGCCCg -3' miRNA: 3'- caGCGCCagGGCGuGCUG-GGU--CCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 151097 | 0.66 | 0.668134 |
Target: 5'- -cCGCGGUucaCCUGCGaGACCUucugGGaGCCCg -3' miRNA: 3'- caGCGCCA---GGGCGUgCUGGG----UC-CGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 33499 | 0.66 | 0.687025 |
Target: 5'- -aUGCaGaagCUGCugGACCCGGGCCa -3' miRNA: 3'- caGCGcCag-GGCGugCUGGGUCCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 54924 | 0.66 | 0.687025 |
Target: 5'- -aCGCGcagcGUCCgcaGCGCGACCguGGUCa -3' miRNA: 3'- caGCGC----CAGGg--CGUGCUGGguCCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 90913 | 0.66 | 0.696414 |
Target: 5'- aUCGU-GUCCCGCACGGaggaCCAcGGCg- -3' miRNA: 3'- cAGCGcCAGGGCGUGCUg---GGU-CCGgg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 36229 | 0.66 | 0.696414 |
Target: 5'- -cCGCaGG-CCCGguCGAUaUAGGCCCc -3' miRNA: 3'- caGCG-CCaGGGCguGCUGgGUCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 56169 | 0.66 | 0.696414 |
Target: 5'- --aGCGGcCCCgguGCACGuagaGCaCCGGGCCg -3' miRNA: 3'- cagCGCCaGGG---CGUGC----UG-GGUCCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 186450 | 0.66 | 0.696414 |
Target: 5'- -gCGCaGGUCuuGCugGuucagccgacGCCCucgcuccuggaGGGCCCg -3' miRNA: 3'- caGCG-CCAGggCGugC----------UGGG-----------UCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 19424 | 0.66 | 0.687025 |
Target: 5'- -gCGCGcccUCCUcCGCGA-CCAGGCCCc -3' miRNA: 3'- caGCGCc--AGGGcGUGCUgGGUCCGGG- -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 111659 | 0.66 | 0.687025 |
Target: 5'- -cCGCGGccacgCCCGUcggauACGGucgUCCAGGCCg -3' miRNA: 3'- caGCGCCa----GGGCG-----UGCU---GGGUCCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 70054 | 0.66 | 0.687025 |
Target: 5'- gGUCGCccGGUCgggcggCCGCagccgcagcaagGCGACgCAGGCCg -3' miRNA: 3'- -CAGCG--CCAG------GGCG------------UGCUGgGUCCGGg -5' |
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10848 | 5' | -63.2 | NC_002794.1 | + | 181905 | 0.66 | 0.668134 |
Target: 5'- -gCGCGGgucguacaccaCCCGCGCGAcggccgucuCCCGGGagCCg -3' miRNA: 3'- caGCGCCa----------GGGCGUGCU---------GGGUCCg-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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