miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 47904 1.04 0.002267
Target:  5'- -gCGCGGUCCCGCACGACCCAGGCCCc -3'
miRNA:   3'- caGCGCCAGGGCGUGCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 189559 0.82 0.08358
Target:  5'- aUgGCGGUCCCGCucggucggcCGGCCCGGGCCg -3'
miRNA:   3'- cAgCGCCAGGGCGu--------GCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 17425 0.81 0.090016
Target:  5'- aUCGCGGUCuCCGCGCcgccggcGCUCGGGCCCg -3'
miRNA:   3'- cAGCGCCAG-GGCGUGc------UGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 150778 0.8 0.104325
Target:  5'- cGUCGuCGGgCUCGUGCGACuCCAGGCCCc -3'
miRNA:   3'- -CAGC-GCCaGGGCGUGCUG-GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 73870 0.8 0.109553
Target:  5'- cGUCGCGGaCCgGgACGACCCGGGUCUc -3'
miRNA:   3'- -CAGCGCCaGGgCgUGCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 154348 0.79 0.117857
Target:  5'- -cCGCGGccgagcUCCCGCGCGGUCCAGGCCg -3'
miRNA:   3'- caGCGCC------AGGGCGUGCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 82916 0.79 0.12193
Target:  5'- cUCGCGGcCCCGCcgccgucgccgcucCGACuCCAGGCCCg -3'
miRNA:   3'- cAGCGCCaGGGCGu-------------GCUG-GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 48638 0.78 0.142944
Target:  5'- cGUCGgGG-CCCGCGagccgccgcaGACUCAGGCCCg -3'
miRNA:   3'- -CAGCgCCaGGGCGUg---------CUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 68845 0.77 0.172828
Target:  5'- cUCGCGGUCCCcgACGACCCcggagcucGGGCUCg -3'
miRNA:   3'- cAGCGCCAGGGcgUGCUGGG--------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 79910 0.76 0.203425
Target:  5'- cUCGCcua-CCGCACGGCCCuGGCCCc -3'
miRNA:   3'- cAGCGccagGGCGUGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 56310 0.75 0.228068
Target:  5'- gGUCGCGGUCgCUG-GCGGCCguGGCCg -3'
miRNA:   3'- -CAGCGCCAG-GGCgUGCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 37003 0.75 0.23329
Target:  5'- --gGCGGaCCCGguagaGCGGCUCGGGCCCg -3'
miRNA:   3'- cagCGCCaGGGCg----UGCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 183483 0.75 0.23329
Target:  5'- -cCGCGGcccgaucCCCGCGCGaACCC-GGCCCc -3'
miRNA:   3'- caGCGCCa------GGGCGUGC-UGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 126622 0.74 0.244035
Target:  5'- cGUCGCGGcgUgaGCGCGACCgGGcGCCCg -3'
miRNA:   3'- -CAGCGCCa-GggCGUGCUGGgUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 184486 0.74 0.255189
Target:  5'- -gCGCGGggccccggacgCCCGgGCGGCgCGGGCCCc -3'
miRNA:   3'- caGCGCCa----------GGGCgUGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 122641 0.74 0.260921
Target:  5'- -aCGCGGUggacgugaucuaCCUGCugGCGGCgCAGGCCCg -3'
miRNA:   3'- caGCGCCA------------GGGCG--UGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 58057 0.73 0.29053
Target:  5'- cGUCgGCGGcCCCgGCggcggcgggacggGCGGCCCGGcGCCCg -3'
miRNA:   3'- -CAG-CGCCaGGG-CG-------------UGCUGGGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 129156 0.73 0.297529
Target:  5'- uGUCGCGG-CCCuCGCGGCCgAuGGCCg -3'
miRNA:   3'- -CAGCGCCaGGGcGUGCUGGgU-CCGGg -5'
10848 5' -63.2 NC_002794.1 + 187901 0.73 0.310587
Target:  5'- -gCGCGGUgCCGCuCG-CCCgccGGGCCCc -3'
miRNA:   3'- caGCGCCAgGGCGuGCuGGG---UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 4826 0.73 0.310587
Target:  5'- cGUCGaaCGGUuguuggccaCCUGCGCGGCCCAcGuGCCCg -3'
miRNA:   3'- -CAGC--GCCA---------GGGCGUGCUGGGU-C-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.