miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 80350 0.73 0.317277
Target:  5'- -cUGCGcGUCCaauaaGCGCG-UCCGGGCCCa -3'
miRNA:   3'- caGCGC-CAGGg----CGUGCuGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 186887 0.72 0.324076
Target:  5'- cUCGCGGUCCggcgucCGCAgGACCagguuccGGCCCc -3'
miRNA:   3'- cAGCGCCAGG------GCGUgCUGGgu-----CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 103259 0.72 0.337997
Target:  5'- -aUGCGGcCCUGCACGAugUCCAGGaCCa -3'
miRNA:   3'- caGCGCCaGGGCGUGCU--GGGUCCgGG- -5'
10848 5' -63.2 NC_002794.1 + 186017 0.72 0.337997
Target:  5'- cUC-CGGgCCCGgGCccgGACCCGGGCCCc -3'
miRNA:   3'- cAGcGCCaGGGCgUG---CUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 78926 0.72 0.345119
Target:  5'- cGUCGgGcaCCCGC-CGccggcaggucACCCAGGCCCa -3'
miRNA:   3'- -CAGCgCcaGGGCGuGC----------UGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 82545 0.72 0.345119
Target:  5'- cGUCaGCGGcccUCCCGC-CGGCCCAgccggcgaGGCCg -3'
miRNA:   3'- -CAG-CGCC---AGGGCGuGCUGGGU--------CCGGg -5'
10848 5' -63.2 NC_002794.1 + 145957 0.72 0.352348
Target:  5'- aGUCGCGaGcgCCCaGCGCG-CCCAGcgcGCCCa -3'
miRNA:   3'- -CAGCGC-Ca-GGG-CGUGCuGGGUC---CGGG- -5'
10848 5' -63.2 NC_002794.1 + 183006 0.72 0.352348
Target:  5'- -cCGCGGgcgcCCCGCGCGcGCCCGccGCCCc -3'
miRNA:   3'- caGCGCCa---GGGCGUGC-UGGGUc-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 66807 0.72 0.352348
Target:  5'- aGUCGCccggcaucgucaGGgcgCCCgGCGCGACuCCGGGCgCCg -3'
miRNA:   3'- -CAGCG------------CCa--GGG-CGUGCUG-GGUCCG-GG- -5'
10848 5' -63.2 NC_002794.1 + 76550 0.72 0.359684
Target:  5'- -aCGCGGUCgCGCGCcggguacucACCC-GGCCCg -3'
miRNA:   3'- caGCGCCAGgGCGUGc--------UGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 194513 0.71 0.370131
Target:  5'- -cCGCGG-CCCGCGugccgcCGGCCCAGcagcgccgccagcacGCCCg -3'
miRNA:   3'- caGCGCCaGGGCGU------GCUGGGUC---------------CGGG- -5'
10848 5' -63.2 NC_002794.1 + 12718 0.71 0.374672
Target:  5'- -cUGCGcGUUCCGCgGCGACgaGGGCCCg -3'
miRNA:   3'- caGCGC-CAGGGCG-UGCUGggUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 138824 0.71 0.382323
Target:  5'- -cCGCGGUCUCGagcuCGCGA-CCGGGCUCu -3'
miRNA:   3'- caGCGCCAGGGC----GUGCUgGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 124152 0.71 0.382323
Target:  5'- --aGCGGUCuCCGCGgGGCCCGGGa-- -3'
miRNA:   3'- cagCGCCAG-GGCGUgCUGGGUCCggg -5'
10848 5' -63.2 NC_002794.1 + 14735 0.71 0.382323
Target:  5'- cUCGgGGUCCgGCGCGucaUCGGaGCCCg -3'
miRNA:   3'- cAGCgCCAGGgCGUGCug-GGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 183523 0.71 0.382323
Target:  5'- uGUCGCGGcCgUGCGCGcCCCGuccGCCCg -3'
miRNA:   3'- -CAGCGCCaGgGCGUGCuGGGUc--CGGG- -5'
10848 5' -63.2 NC_002794.1 + 72929 0.71 0.390078
Target:  5'- cGUCGgagcCGGcgUCCGCGCGcccaCCGGGCCCa -3'
miRNA:   3'- -CAGC----GCCa-GGGCGUGCug--GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 108450 0.71 0.405892
Target:  5'- cUCGCGGcggcggCCCGC-CGGCaCGGGCCg -3'
miRNA:   3'- cAGCGCCa-----GGGCGuGCUGgGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 45442 0.71 0.405892
Target:  5'- cUCGCGGaCCCGguCGcgcgucagcggGCCCAGGguCCCg -3'
miRNA:   3'- cAGCGCCaGGGCguGC-----------UGGGUCC--GGG- -5'
10848 5' -63.2 NC_002794.1 + 99268 0.71 0.405892
Target:  5'- cUCGgGGgcUCCgGCGCGcuCCCGGGCUCu -3'
miRNA:   3'- cAGCgCC--AGGgCGUGCu-GGGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.