miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 14925 0.71 0.405892
Target:  5'- cUCGCGGUCCCG-ACGugCUcucgaucGGCUCg -3'
miRNA:   3'- cAGCGCCAGGGCgUGCugGGu------CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 111094 0.71 0.413948
Target:  5'- gGUCgGCGGgCCCgGCGgGACCguGGCCg -3'
miRNA:   3'- -CAG-CGCCaGGG-CGUgCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 153939 0.71 0.413948
Target:  5'- -cCGCGGacaCUCGCugGcucuACCCuGGCCCg -3'
miRNA:   3'- caGCGCCa--GGGCGugC----UGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 187046 0.7 0.422103
Target:  5'- cUCGCaGUCCCGgA--GCCCGcGGCCCg -3'
miRNA:   3'- cAGCGcCAGGGCgUgcUGGGU-CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 65238 0.7 0.430353
Target:  5'- --gGCGGUCgCCGCggcgGCGAUCC-GGCCUc -3'
miRNA:   3'- cagCGCCAG-GGCG----UGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 87038 0.7 0.438697
Target:  5'- -cCGgGGaCCgGCGCGGCUCGGGgCCg -3'
miRNA:   3'- caGCgCCaGGgCGUGCUGGGUCCgGG- -5'
10848 5' -63.2 NC_002794.1 + 86901 0.7 0.438697
Target:  5'- --gGCGGggCCGC-CGACCCGGugacGCCCg -3'
miRNA:   3'- cagCGCCagGGCGuGCUGGGUC----CGGG- -5'
10848 5' -63.2 NC_002794.1 + 32166 0.7 0.438697
Target:  5'- --aGCGGUggCCCGCcUGGCCCcGGUCCc -3'
miRNA:   3'- cagCGCCA--GGGCGuGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 52753 0.7 0.438697
Target:  5'- uUCGUaGUaCCgCGcCGCGGCCCGGGCCg -3'
miRNA:   3'- cAGCGcCA-GG-GC-GUGCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 79003 0.7 0.447133
Target:  5'- aGUCGCGGcgacuccaUCCCGCccuCGGCCgCcuucugccGGCCCg -3'
miRNA:   3'- -CAGCGCC--------AGGGCGu--GCUGG-Gu-------CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 90946 0.7 0.447133
Target:  5'- --gGCGGgcugUgCGCcgaGGCCCGGGCCCg -3'
miRNA:   3'- cagCGCCa---GgGCGug-CUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 120742 0.7 0.455658
Target:  5'- --gGCGGUCCgggaGCGCaGACUCugcuGGCCCu -3'
miRNA:   3'- cagCGCCAGGg---CGUG-CUGGGu---CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 6370 0.7 0.464271
Target:  5'- uGUCGCGGUCCC---UGGCCCuGcGCCg -3'
miRNA:   3'- -CAGCGCCAGGGcguGCUGGGuC-CGGg -5'
10848 5' -63.2 NC_002794.1 + 90487 0.69 0.472967
Target:  5'- -cCGCcGUCCCGCGCGAUC--GGCCg -3'
miRNA:   3'- caGCGcCAGGGCGUGCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 112083 0.69 0.490601
Target:  5'- aGUCaGCaGGUCCCGUugcGCG-UCCAGGCgCg -3'
miRNA:   3'- -CAG-CG-CCAGGGCG---UGCuGGGUCCGgG- -5'
10848 5' -63.2 NC_002794.1 + 13349 0.69 0.490601
Target:  5'- gGUgGCGGcgCCC-CuCG-CCCGGGCCCu -3'
miRNA:   3'- -CAgCGCCa-GGGcGuGCuGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 119769 0.69 0.490601
Target:  5'- gGUCGCGG-CCgGCcuccagGCGGCUCcGGUCCg -3'
miRNA:   3'- -CAGCGCCaGGgCG------UGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 152582 0.69 0.499532
Target:  5'- -cCGCGGcggCCGCcacgucccuGCGGCgCGGGCCCa -3'
miRNA:   3'- caGCGCCag-GGCG---------UGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 31390 0.69 0.499532
Target:  5'- cGUCgGCGGcCCCGC-CGcGCCCGccGcGCCCg -3'
miRNA:   3'- -CAG-CGCCaGGGCGuGC-UGGGU--C-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 49244 0.69 0.503124
Target:  5'- cGUCGaCGGgcgCCCGCGC-ACCCacgacgggcgcuccaAcGGCCCg -3'
miRNA:   3'- -CAGC-GCCa--GGGCGUGcUGGG---------------U-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.