miRNA display CGI


Results 21 - 40 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 151097 0.66 0.668134
Target:  5'- -cCGCGGUucaCCUGCGaGACCUucugGGaGCCCg -3'
miRNA:   3'- caGCGCCA---GGGCGUgCUGGG----UC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 41245 0.66 0.668134
Target:  5'- -cCGCGG--CCGC-CGACgCCGgcGGCCCg -3'
miRNA:   3'- caGCGCCagGGCGuGCUG-GGU--CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 114803 0.66 0.667187
Target:  5'- cUCGCaGGUCCCGgA-GGCCCGcgcgcucuccggcGGCCg -3'
miRNA:   3'- cAGCG-CCAGGGCgUgCUGGGU-------------CCGGg -5'
10848 5' -63.2 NC_002794.1 + 98904 0.66 0.667187
Target:  5'- -gCGCGGUCUCG-ACGACUucaugagCGGGCUg -3'
miRNA:   3'- caGCGCCAGGGCgUGCUGG-------GUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 35779 0.66 0.667187
Target:  5'- cGUCGcCGGcgucgucUCCgGCGUGACCCuGcGCCCc -3'
miRNA:   3'- -CAGC-GCC-------AGGgCGUGCUGGGuC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 193832 0.66 0.662445
Target:  5'- cGUCGCGGcgCCgGCACuuauuauaguGugCCcacccaccccuccccGGGCCCc -3'
miRNA:   3'- -CAGCGCCa-GGgCGUG----------CugGG---------------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 90576 0.66 0.658648
Target:  5'- --gGCgGGUCCCGgGCGcUCCAGuCCCg -3'
miRNA:   3'- cagCG-CCAGGGCgUGCuGGGUCcGGG- -5'
10848 5' -63.2 NC_002794.1 + 187588 0.66 0.658648
Target:  5'- -gCGCGGcCgCCGuCGCGacGCCCGGcgucGCCCa -3'
miRNA:   3'- caGCGCCaG-GGC-GUGC--UGGGUC----CGGG- -5'
10848 5' -63.2 NC_002794.1 + 77908 0.66 0.658648
Target:  5'- -aCcCGGcCCCGUuCGACCC-GGUCCg -3'
miRNA:   3'- caGcGCCaGGGCGuGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 19265 0.66 0.658648
Target:  5'- -cCGCGGcCCCcgugGCGCGuCuCCuGGCCUg -3'
miRNA:   3'- caGCGCCaGGG----CGUGCuG-GGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 188287 0.66 0.658648
Target:  5'- -aUGCaGGgcgCCgCGCGCcgGACCC-GGCCCg -3'
miRNA:   3'- caGCG-CCa--GG-GCGUG--CUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 42468 0.66 0.658648
Target:  5'- cGUCGUccauGUCgCGCGCG-CCgGGGCCg -3'
miRNA:   3'- -CAGCGc---CAGgGCGUGCuGGgUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 137358 0.66 0.652946
Target:  5'- cGUCGgGGUCUUcuucgagccgggcgaGCGcCGACgCGGGUCCg -3'
miRNA:   3'- -CAGCgCCAGGG---------------CGU-GCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 62702 0.66 0.652946
Target:  5'- uGUCgGCGGcCgCCGaCGCGACCCAGcgagacgcacuucccGCCg -3'
miRNA:   3'- -CAG-CGCCaG-GGC-GUGCUGGGUC---------------CGGg -5'
10848 5' -63.2 NC_002794.1 + 8677 0.66 0.652946
Target:  5'- uGUCGaucuCGGcCCCGUggACGAuggagcacacccugcCCCGGGUCCa -3'
miRNA:   3'- -CAGC----GCCaGGGCG--UGCU---------------GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 30040 0.66 0.649142
Target:  5'- -gCGCGuGaacgaCCGa--GACCCGGGCCCg -3'
miRNA:   3'- caGCGC-Cag---GGCgugCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 115317 0.66 0.649142
Target:  5'- cGUCcgcaCGGUCgCCGCgGCG-UCCGGGCCg -3'
miRNA:   3'- -CAGc---GCCAG-GGCG-UGCuGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 91281 0.66 0.649142
Target:  5'- -gCGCGG-CCUGUACGugUCGGcGCUg -3'
miRNA:   3'- caGCGCCaGGGCGUGCugGGUC-CGGg -5'
10848 5' -63.2 NC_002794.1 + 193744 0.66 0.649142
Target:  5'- -cCGCGGcUUCgGCgaGCGACCgCcGGCCCc -3'
miRNA:   3'- caGCGCC-AGGgCG--UGCUGG-GuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 186647 0.66 0.648191
Target:  5'- -gCGCGGgucggCCGCGCGcACCCcguacacGGcGCCCg -3'
miRNA:   3'- caGCGCCag---GGCGUGC-UGGG-------UC-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.